Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   LIS76_RS05345 Genome accession   NZ_CP085717
Coordinates   1057174..1057356 (+) Length   60 a.a.
NCBI ID   WP_252293501.1    Uniprot ID   -
Organism   Peribacillus asahii strain CMF4     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1052174..1062356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS76_RS05325 (LIS76_05330) clpB 1052438..1055029 (+) 2592 WP_252293492.1 ATP-dependent chaperone ClpB -
  LIS76_RS05330 (LIS76_05335) - 1055078..1055266 (-) 189 WP_127759381.1 YjzD family protein -
  LIS76_RS05335 (LIS76_05340) - 1055496..1056215 (+) 720 WP_252293495.1 hydrolase -
  LIS76_RS05340 (LIS76_05345) - 1056287..1057099 (+) 813 WP_252293498.1 hypothetical protein -
  LIS76_RS05345 (LIS76_05350) comZ 1057174..1057356 (+) 183 WP_252293501.1 ComZ family protein Regulator
  LIS76_RS05350 (LIS76_05355) - 1057547..1058482 (+) 936 WP_252293503.1 beta-ketoacyl-ACP synthase III -
  LIS76_RS05355 (LIS76_05360) fabF 1058528..1059766 (+) 1239 WP_252293506.1 beta-ketoacyl-ACP synthase II -
  LIS76_RS05360 (LIS76_05365) - 1060095..1060859 (+) 765 WP_252293508.1 DUF2268 domain-containing putative Zn-dependent protease -
  LIS76_RS05365 (LIS76_05370) - 1060971..1061726 (+) 756 WP_252293510.1 YjbA family protein -
  LIS76_RS05370 (LIS76_05375) - 1061868..1062020 (+) 153 WP_252293513.1 YfhD family protein -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 6886.97 Da        Isoelectric Point: 4.1605

>NTDB_id=619570 LIS76_RS05345 WP_252293501.1 1057174..1057356(+) (comZ) [Peribacillus asahii strain CMF4]
MSEDKTLEFMAIAMKYFPEAKEQLEANGIPFSMEMAAPFMDLFKKVMQEAYELGKSDAQQ

Nucleotide


Download         Length: 183 bp        

>NTDB_id=619570 LIS76_RS05345 WP_252293501.1 1057174..1057356(+) (comZ) [Peribacillus asahii strain CMF4]
ATGAGTGAAGATAAAACGCTTGAATTTATGGCGATTGCGATGAAGTACTTCCCAGAAGCAAAAGAGCAGTTAGAGGCAAA
CGGCATTCCTTTTTCAATGGAAATGGCGGCTCCGTTTATGGATTTATTTAAAAAAGTCATGCAAGAAGCATATGAGCTAG
GGAAAAGCGACGCTCAGCAGTAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

67.797

98.333

0.667