Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LIT37_RS20540 Genome accession   NZ_CP085714
Coordinates   4101769..4103163 (-) Length   464 a.a.
NCBI ID   WP_286676490.1    Uniprot ID   -
Organism   Peribacillus asahii strain CK1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4096769..4108163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT37_RS20510 (LIT37_20555) flgL 4097083..4097964 (-) 882 WP_252287361.1 flagellar hook-associated protein FlgL -
  LIT37_RS20515 (LIT37_20560) flgK 4097983..4099536 (-) 1554 WP_252287362.1 flagellar hook-associated protein FlgK -
  LIT37_RS20520 (LIT37_20565) - 4099561..4100031 (-) 471 WP_252287363.1 flagellar protein FlgN -
  LIT37_RS20525 (LIT37_20570) flgM 4100108..4100371 (-) 264 WP_127762100.1 flagellar biosynthesis anti-sigma factor FlgM -
  LIT37_RS20530 (LIT37_20575) - 4100574..4100984 (-) 411 WP_252283597.1 TIGR03826 family flagellar region protein -
  LIT37_RS20535 (LIT37_20580) - 4101084..4101776 (-) 693 WP_252287364.1 ComF family protein -
  LIT37_RS20540 (LIT37_20585) comFA 4101769..4103163 (-) 1395 WP_286676490.1 DEAD/DEAH box helicase Machinery gene
  LIT37_RS20545 (LIT37_20590) - 4103275..4104243 (+) 969 WP_252287365.1 nuclease-related domain-containing protein -
  LIT37_RS20550 (LIT37_20595) - 4104369..4105211 (-) 843 WP_119117628.1 DegV family protein -
  LIT37_RS20555 (LIT37_20600) - 4105341..4106024 (-) 684 WP_252287366.1 response regulator transcription factor -
  LIT37_RS20560 (LIT37_20605) - 4106075..4107217 (-) 1143 WP_252287367.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52165.36 Da        Isoelectric Point: 8.6548

>NTDB_id=619549 LIT37_RS20540 WP_286676490.1 4101769..4103163(-) (comFA) [Peribacillus asahii strain CK1]
MNPISHSPLSIPQQAYSTELQHHLFGRQLLAAEIPFSLDVLETHIEQGYVAKTFGIELDHCIRCGNQDKQLFYTFPCAIC
RQLCTYCRSCIMMGRVSECTPLYTWTGPAYDFHVPKSVMNWSGTLSEGQQTASDRVKQVILHQEELLVWAVCGAGKTEVL
FAGIEAGLLAGKRICIATPRTDVVLELAPRLKKAFPFIEVAALYGGSDDRHKLAPLTVATTHQLFRFKEAFDAMIIDEVD
AFPYSMDPSLHYAVQKAKKQTAATIYLTATPSRQMKKQYRSGKLQAVTIPARYHRQPIPVPEMKWCGNWAKQFQQKKIPR
PVQAWVNERLQSQTPILLFFPSIAVMETARPLFQNLPAVYAEHPNRKERVQALRDGELQGLLTTTILERGVTIERLEVAV
IGAEHEVFTESALVQIAGRVGRSFAYPTGSITFFHYGKSKAMVEAIKHITSMNEEARKRGLLDG

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=619549 LIT37_RS20540 WP_286676490.1 4101769..4103163(-) (comFA) [Peribacillus asahii strain CK1]
GTGAATCCTATTTCTCACTCCCCGCTTTCTATCCCTCAACAAGCTTATTCCACTGAACTTCAGCATCATTTATTTGGCCG
TCAATTGTTAGCGGCTGAAATTCCGTTTTCCCTCGATGTACTTGAGACACATATTGAACAAGGTTATGTCGCAAAAACGT
TTGGAATTGAATTGGATCATTGTATTCGATGCGGCAACCAAGACAAGCAGTTATTTTATACGTTTCCGTGTGCGATATGC
CGGCAGCTCTGCACGTATTGTCGTTCGTGCATTATGATGGGTCGTGTGAGCGAATGTACGCCGCTGTATACGTGGACCGG
CCCGGCTTATGATTTCCATGTCCCGAAAAGCGTGATGAATTGGTCAGGTACGCTTTCCGAAGGGCAGCAAACTGCATCGG
ACCGAGTGAAGCAAGTCATTCTTCATCAAGAAGAGCTTCTCGTTTGGGCCGTTTGTGGAGCTGGAAAAACAGAAGTGCTG
TTTGCGGGAATTGAAGCAGGGCTGCTTGCTGGAAAGCGGATCTGTATTGCAACACCGCGAACAGATGTCGTACTGGAATT
AGCACCTCGGTTGAAAAAAGCATTCCCCTTTATCGAAGTAGCCGCTCTTTATGGAGGCAGTGATGATCGACATAAGCTAG
CGCCGCTTACCGTGGCGACGACACATCAGCTCTTTCGCTTTAAAGAAGCGTTTGATGCCATGATTATCGATGAAGTTGAT
GCCTTTCCGTATTCGATGGATCCTTCGCTTCACTATGCGGTACAAAAAGCAAAGAAGCAGACGGCCGCGACTATTTATTT
AACGGCTACACCATCGAGACAAATGAAAAAGCAATATCGAAGCGGCAAACTTCAAGCGGTCACTATCCCGGCGCGCTATC
ATCGCCAGCCGATTCCGGTCCCAGAGATGAAATGGTGCGGCAACTGGGCCAAGCAGTTTCAGCAAAAGAAAATTCCGCGT
CCCGTTCAAGCTTGGGTGAATGAACGCCTACAAAGCCAAACACCCATTTTATTATTCTTCCCAAGCATTGCCGTAATGGA
AACCGCACGCCCTCTTTTTCAGAACCTCCCAGCCGTTTATGCCGAGCATCCGAATCGGAAAGAACGCGTGCAAGCATTAC
GGGACGGTGAACTGCAAGGTTTATTAACGACGACGATTTTAGAACGAGGCGTGACGATTGAGCGTTTAGAGGTGGCGGTT
ATTGGAGCGGAACACGAAGTTTTTACGGAAAGCGCTCTTGTCCAAATTGCCGGCCGCGTTGGACGCAGTTTCGCTTACCC
AACAGGGAGCATTACGTTTTTTCATTATGGAAAAAGTAAGGCAATGGTAGAAGCAATTAAACATATTACATCGATGAATG
AGGAAGCGAGAAAGCGTGGGCTTCTCGATGGCTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(125-273)

Helicase conserved C-terminal domain (Helicase_C)

(332-422)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

49.78

97.845

0.487