Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LIT37_RS19960 Genome accession   NZ_CP085714
Coordinates   3982902..3983858 (-) Length   318 a.a.
NCBI ID   WP_252287281.1    Uniprot ID   -
Organism   Peribacillus asahii strain CK1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3977902..3988858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT37_RS19945 (LIT37_19990) - 3979908..3980930 (-) 1023 WP_252287278.1 siderophore ABC transporter substrate-binding protein -
  LIT37_RS19950 (LIT37_19995) - 3981195..3981962 (-) 768 WP_252287279.1 ABC transporter ATP-binding protein -
  LIT37_RS19955 (LIT37_20000) - 3981959..3982915 (-) 957 WP_252287280.1 iron chelate uptake ABC transporter family permease subunit -
  LIT37_RS19960 (LIT37_20005) ceuB 3982902..3983858 (-) 957 WP_252287281.1 ABC transporter permease Machinery gene
  LIT37_RS19965 (LIT37_20010) - 3984272..3984550 (+) 279 WP_252287282.1 DUF1450 domain-containing protein -
  LIT37_RS19970 (LIT37_20015) shc 3984689..3986566 (+) 1878 WP_252287283.1 squalene--hopene cyclase -
  LIT37_RS19975 (LIT37_20020) - 3986702..3987397 (-) 696 WP_252287284.1 ABC transporter ATP-binding protein -
  LIT37_RS19980 (LIT37_20025) - 3987394..3988206 (-) 813 WP_252287285.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34722.87 Da        Isoelectric Point: 9.5540

>NTDB_id=619545 LIT37_RS19960 WP_252287281.1 3982902..3983858(-) (ceuB) [Peribacillus asahii strain CK1]
MRIWMLIVAAVVLSFISLFIGAIDIKPSDLLDWDSDKTQIFLASRVPRLMAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISMLFFTNVTYTQQVIFSFAFALVGTLVFMQILDRIKFKDVIFVPLIGIMYGNILSSVTTFFAYEADLI
QNISSWLMGSFTLIIAGRYELLYISIPAVILAYLYANKFTVAGMGEDFAKNLGLSYKFVLNIGLILVAIIATTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAVLGIVFLLLCDIIGRIIVQPYEIPVNVTVAVIGSVIFLIMLVGGRSYAKK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=619545 LIT37_RS19960 WP_252287281.1 3982902..3983858(-) (ceuB) [Peribacillus asahii strain CK1]
ATGAGAATATGGATGTTAATAGTTGCAGCTGTAGTCCTGTCATTTATATCGCTATTTATCGGGGCGATTGATATCAAGCC
GAGTGACTTGCTCGACTGGGATTCGGATAAGACACAAATTTTCTTGGCAAGTCGAGTACCACGTTTAATGGCAATTATAT
TGGCAGGAGCAGGAATGAGTATTGCTGGTTTAATTATGCAGTCTTTAAGTCGAAATAAGTTTGTTTCTCCAACGACTGCT
GGTACGTTAGATGCAGCAAAACTAGGAATTTTAATTTCAATGCTGTTCTTTACAAATGTAACCTATACGCAGCAAGTTAT
TTTTAGCTTTGCCTTTGCTTTAGTAGGAACATTAGTTTTTATGCAAATTTTGGATCGTATTAAATTTAAAGATGTCATTT
TTGTTCCACTAATTGGGATTATGTATGGGAACATTTTGTCATCGGTGACGACATTTTTTGCATATGAAGCAGATCTTATT
CAAAATATTTCATCTTGGTTAATGGGGAGCTTCACATTAATTATTGCAGGACGCTATGAACTGTTATACATAAGTATTCC
AGCGGTTATTTTAGCGTATCTTTATGCGAATAAATTTACAGTCGCAGGTATGGGGGAAGACTTCGCTAAAAACTTAGGCT
TAAGTTATAAGTTTGTATTAAATATAGGTCTTATCCTAGTTGCCATTATTGCTACAACTGTCGTACTAACTGTCGGAGTT
ATTCCGTTTTTAGGCTTAATCGTTCCTAATATTGTATCTCTTTATTTAGGTGATAATCTACGCAAAACTATTCCACATAC
AGCGGTACTAGGAATTGTCTTCCTATTATTATGTGATATTATTGGACGCATTATTGTTCAGCCTTATGAGATTCCCGTTA
ACGTAACTGTGGCAGTAATCGGTAGTGTGATCTTCTTAATTATGTTAGTCGGGGGGAGATCATATGCGAAAAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.15

94.654

0.522