Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LIT37_RS16075 Genome accession   NZ_CP085714
Coordinates   3205892..3207607 (-) Length   571 a.a.
NCBI ID   WP_252286680.1    Uniprot ID   -
Organism   Peribacillus asahii strain CK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3200892..3212607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT37_RS16060 (LIT37_16100) - 3201567..3203144 (-) 1578 WP_252286678.1 FapA family protein -
  LIT37_RS16065 (LIT37_16105) spo0A 3203309..3204097 (-) 789 WP_127761281.1 sporulation transcription factor Spo0A -
  LIT37_RS16070 (LIT37_16110) spoIVB 3204466..3205761 (-) 1296 WP_252286679.1 SpoIVB peptidase -
  LIT37_RS16075 (LIT37_16115) recN 3205892..3207607 (-) 1716 WP_252286680.1 DNA repair protein RecN Machinery gene
  LIT37_RS16080 (LIT37_16120) argR 3207628..3208077 (-) 450 WP_119115461.1 transcriptional regulator ArgR -
  LIT37_RS16085 (LIT37_16125) - 3208363..3209190 (-) 828 WP_252286681.1 TlyA family RNA methyltransferase -
  LIT37_RS16090 (LIT37_16130) dxs 3209195..3211087 (-) 1893 WP_252291628.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LIT37_RS16095 (LIT37_16135) - 3211520..3212410 (-) 891 WP_252291630.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64564.49 Da        Isoelectric Point: 5.0929

>NTDB_id=619533 LIT37_RS16075 WP_252286680.1 3205892..3207607(-) (recN) [Peribacillus asahii strain CK1]
MLSELSIKNFAIIDSLAISLEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGETKAEIEGLFQIDEPQHPVFVK
ASEFGIDISDGMVVIRREMSTSGKSVCRVNGKLVTIATLREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEEVILAL
SEYEKLYKRYNTAQKQLKSLSQDEQQMVHRLDLIQFQFDEIQKAELKLDEDEQLLEERKKINNYEKIHEALQTSYNALNG
EQHALDWLSIAMHHLEEAANLDESLKNSSDIVSNSYFLLEDAISTIRDQLDSLDFDTERIDFIEGRLNEINQLKRKYGRT
IEEIVEYGAKIEEEIETLLNRETHIAKLEKELNSIKADLLIEAKHLSSLRQTYAEQLTKKIKQELKELYMEKTVFEARFH
QTAHTFDETIDREINRTGLDVMEFYISTNPGEPLKPLSKIASGGEMSRIMLALKSIFSQHQGITSIIFDEVDTGVSGRVA
QSIGEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKKVTEGRTHTSVTPLAEEEKIKEIGRMIAGVEITDLTKQHANEL
IQQAHKIKVTS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=619533 LIT37_RS16075 WP_252286680.1 3205892..3207607(-) (recN) [Peribacillus asahii strain CK1]
TTGTTATCAGAATTATCGATTAAAAATTTTGCCATTATAGATAGTTTAGCGATTTCTTTAGAAAAAGGTTTAACGGTGCT
AACTGGAGAAACGGGAGCAGGAAAGTCCATTATTATTGATGCTGTTCACTTATTAGTAGGGGGACGCGGGTCAGCGGAGT
TTATTCGACATGGGGAAACGAAGGCTGAAATCGAAGGGCTATTTCAAATTGATGAGCCGCAGCACCCTGTTTTTGTTAAA
GCATCGGAATTTGGGATTGATATAAGTGATGGCATGGTTGTTATAAGACGAGAAATGTCTACGAGCGGCAAAAGTGTATG
TCGAGTAAACGGAAAGCTTGTGACCATCGCTACGTTACGTGAAATTGGTCGAACGCTTATCGATATTCATGGACAGCACG
AACATCAAGAGCTGATGGATGAACGTCTCCATTTACCTTTACTTGATCAATTTGGCGGGGAAGAGGTTATATTAGCGCTT
TCGGAATATGAAAAGCTATATAAACGCTATAACACTGCTCAGAAGCAGTTAAAAAGTCTCAGCCAGGACGAGCAGCAAAT
GGTGCATCGACTCGATTTAATTCAGTTTCAATTTGATGAAATTCAAAAGGCTGAGTTAAAGCTGGACGAAGACGAGCAGC
TTCTTGAGGAACGAAAAAAAATTAATAACTATGAAAAAATTCACGAAGCTTTGCAAACGAGCTACAATGCTTTGAATGGT
GAACAGCATGCGTTAGATTGGCTGTCGATTGCGATGCATCATTTAGAAGAAGCAGCTAACCTTGATGAATCTTTAAAGAA
TAGTTCAGATATTGTTTCAAATAGTTACTTTTTATTAGAAGACGCTATTTCAACGATTCGTGATCAGCTGGATTCTCTTG
ATTTTGATACGGAACGAATTGATTTTATTGAAGGGCGCCTAAATGAAATTAACCAATTGAAACGTAAATACGGACGTACG
ATTGAGGAAATTGTCGAATATGGAGCAAAGATTGAAGAAGAAATTGAAACGTTGCTTAATCGGGAAACGCATATTGCTAA
GCTGGAAAAGGAATTAAACTCGATTAAAGCAGATTTACTCATTGAGGCTAAACATTTATCGAGTCTTCGTCAAACCTATG
CAGAGCAATTAACGAAAAAAATTAAGCAAGAACTGAAAGAATTATATATGGAAAAAACTGTTTTTGAAGCTCGTTTTCAC
CAAACGGCTCATACATTTGATGAAACAATCGACAGAGAAATTAATCGAACAGGACTTGATGTCATGGAGTTTTATATTTC
AACGAATCCTGGTGAACCGCTAAAACCGTTATCGAAAATTGCCTCTGGCGGTGAAATGTCCCGTATTATGTTGGCTCTAA
AAAGTATTTTTTCGCAGCATCAAGGGATTACATCGATTATTTTTGATGAAGTTGATACAGGAGTAAGCGGGCGGGTTGCT
CAATCGATTGGAGAAAAAATTTACAAAGTAGCTACAGGTTCTCAAGTGCTTTGTATTTCTCATTTACCTCAAGTTGCTGC
AATGGCTGATACGCATTTGTTTATTGCTAAAAAAGTGACAGAAGGAAGAACACATACATCTGTTACACCATTAGCTGAGG
AAGAAAAAATAAAAGAAATCGGCCGGATGATAGCTGGTGTTGAAATTACTGATTTAACGAAGCAACATGCTAATGAATTA
ATTCAACAAGCTCATAAAATTAAAGTCACATCCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.62