Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LIT37_RS05690 Genome accession   NZ_CP085714
Coordinates   1119780..1121600 (+) Length   606 a.a.
NCBI ID   WP_252289423.1    Uniprot ID   -
Organism   Peribacillus asahii strain CK1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1114780..1126600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT37_RS05670 (LIT37_05680) preA 1115074..1116360 (+) 1287 WP_252289415.1 NAD-dependent dihydropyrimidine dehydrogenase subunit PreA -
  LIT37_RS05675 (LIT37_05685) - 1116484..1117956 (+) 1473 WP_252289417.1 NCS1 family transporter -
  LIT37_RS05680 (LIT37_05690) - 1117979..1118215 (+) 237 WP_252289419.1 hypothetical protein -
  LIT37_RS05685 (LIT37_05695) - 1118456..1119667 (+) 1212 WP_252289421.1 competence protein CoiA family protein -
  LIT37_RS05690 (LIT37_05700) pepF 1119780..1121600 (+) 1821 WP_252289423.1 oligoendopeptidase F Regulator
  LIT37_RS05695 (LIT37_05705) - 1121652..1121819 (-) 168 WP_182480650.1 hypothetical protein -
  LIT37_RS05700 (LIT37_05710) - 1122387..1123259 (-) 873 WP_245980195.1 ClpXP adapter SpxH family protein -
  LIT37_RS05705 (LIT37_05715) - 1123283..1123687 (-) 405 WP_119118160.1 globin -
  LIT37_RS05710 (LIT37_05720) - 1123965..1124588 (-) 624 WP_252289425.1 lytic transglycosylase domain-containing protein -
  LIT37_RS05715 (LIT37_05725) - 1124617..1125195 (-) 579 WP_252289427.1 CYTH domain-containing protein -
  LIT37_RS05720 (LIT37_05730) - 1125519..1126148 (+) 630 WP_119118163.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 69978.35 Da        Isoelectric Point: 4.6721

>NTDB_id=619526 LIT37_RS05690 WP_252289423.1 1119780..1121600(+) (pepF) [Peribacillus asahii strain CK1]
MEECEMTKNTLPSRQDIAVEDTWRLEDIFASDEAWEAAYQEVKEELKKANQFQGKLGESADQLYNALQFQDNVLEKLGKV
YAYSHMRYDQDTTNSLYQGFDDRAKNLYAQASSAFAYIVPELLSIEESTISQFMAEKSELKLYEHAIEEINLQRPHVLSA
TEEALLAQASEVFDASSNTFGMLNNADLKFPTIKDEDGNDAEITHGRYIRFLESTDRRVRKDAFEGVYSTYGKFRNTFAS
TLAGQVKSQNFNASVRKYDNARQAALSNNNIPEAVYDNLVETVNEHLPLLHRYLDLRKKVLKLDELHMYDLFTPLVQEVK
MEVTYEEAKDYVLKGLAPLGEDYLQVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQNNVNNLFTLVHEFGH
SVHSYYTRKYQPYPYGNYSIFVAEVASTCNENLLNDYLLNTIEDEKKRIYLLNHYLEGFRGTLFRQTMFAEFEHTIHVKA
QNGEALTADMLTEEYYALNKKYFGDNMVIDEEIGLEWARIPHFYYNYYVYQYATGISAATALSKQILEEGEPAVKRYIEF
LKSGSSDYPIEVLKKAGVDMTQAEPVREALKVFEEKLNELESLLLK

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=619526 LIT37_RS05690 WP_252289423.1 1119780..1121600(+) (pepF) [Peribacillus asahii strain CK1]
ATGGAGGAATGTGAAATGACAAAGAATACATTACCATCACGCCAAGATATTGCGGTTGAGGATACATGGAGACTTGAGGA
CATTTTTGCATCAGATGAGGCTTGGGAAGCGGCTTACCAGGAAGTAAAAGAAGAGTTAAAGAAAGCGAATCAATTCCAAG
GCAAGTTAGGAGAAAGTGCAGATCAATTATATAATGCGCTGCAATTTCAAGATAATGTGTTAGAGAAGCTAGGAAAAGTC
TATGCGTACTCCCATATGCGTTATGATCAAGATACAACGAACTCTCTTTATCAAGGGTTCGATGACCGGGCGAAAAATTT
ATATGCACAAGCATCAAGTGCATTTGCGTATATTGTGCCTGAACTATTAAGTATCGAAGAAAGCACCATTTCTCAGTTTA
TGGCTGAGAAGAGTGAATTGAAATTATATGAACATGCAATTGAAGAAATTAATTTACAGCGTCCGCATGTGTTATCTGCG
ACAGAGGAGGCATTGTTAGCTCAAGCTTCAGAAGTGTTTGATGCCTCTAGTAATACGTTTGGAATGTTAAATAATGCGGA
TTTGAAATTCCCAACGATTAAAGATGAAGACGGCAATGATGCAGAGATTACGCATGGCCGCTATATTCGCTTTTTAGAAA
GTACCGATCGCCGTGTTCGCAAGGATGCGTTTGAAGGAGTATATAGCACGTATGGCAAGTTCCGTAATACATTTGCGAGC
ACGCTGGCTGGGCAAGTGAAAAGCCAAAACTTTAATGCATCTGTTCGTAAATATGACAATGCCCGTCAAGCAGCTCTAAG
CAATAATAATATTCCAGAAGCGGTTTATGATAATCTAGTGGAAACAGTGAATGAGCATCTTCCTTTACTACACCGCTATT
TAGATTTACGCAAGAAAGTTCTAAAGCTTGATGAACTTCATATGTACGATTTATTTACGCCGCTTGTACAAGAAGTGAAG
ATGGAAGTAACGTATGAAGAAGCGAAAGACTATGTTTTAAAAGGTCTTGCGCCGCTTGGTGAAGATTATTTACAAGTTCT
AAAAGAAGGATTTGAAAATCGTTGGGTCGATGTGCATGAGAATAAAGGAAAACGCAGCGGTGCGTATTCTTCAGGTACAT
ATGGCACAAATCCGTATATTTTAATGAACTGGCAAAACAACGTGAATAATCTATTTACCCTTGTTCATGAATTCGGTCAT
TCTGTTCATAGTTACTACACGCGTAAATATCAGCCATATCCGTATGGAAACTACTCAATTTTCGTAGCGGAAGTAGCTTC
GACATGTAATGAGAACTTATTAAATGATTATTTATTAAATACAATTGAGGACGAGAAGAAGCGAATTTATTTATTAAATC
ATTATTTAGAAGGCTTCCGAGGCACACTATTCCGTCAAACAATGTTTGCAGAGTTTGAGCATACCATTCACGTAAAAGCT
CAAAATGGTGAGGCATTAACAGCGGATATGCTTACGGAAGAGTACTATGCGTTAAATAAGAAGTATTTTGGCGATAACAT
GGTGATTGATGAAGAAATTGGCTTAGAATGGGCGAGAATTCCGCATTTCTATTATAATTATTATGTATATCAATATGCGA
CAGGTATTAGCGCGGCTACAGCATTAAGTAAACAAATTCTTGAAGAAGGGGAGCCTGCGGTTAAACGATATATTGAATTC
TTAAAATCAGGCAGCTCCGATTATCCGATTGAAGTATTGAAAAAAGCTGGAGTCGATATGACGCAAGCCGAGCCAGTTCG
TGAAGCATTAAAAGTGTTTGAAGAGAAATTAAATGAATTAGAATCACTTTTATTAAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(121-190)

Peptidase family M3 (Peptidase_M3)

(212-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.111

96.535

0.493