Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   LIT37_RS05590 Genome accession   NZ_CP085714
Coordinates   1098511..1098693 (+) Length   60 a.a.
NCBI ID   WP_119118137.1    Uniprot ID   A0A398B0S8
Organism   Peribacillus asahii strain CK1     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1093511..1103693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT37_RS05570 (LIT37_05580) clpB 1093774..1096365 (+) 2592 WP_252289380.1 ATP-dependent chaperone ClpB -
  LIT37_RS05575 (LIT37_05585) - 1096414..1096602 (-) 189 WP_252289381.1 YjzD family protein -
  LIT37_RS05580 (LIT37_05590) - 1096834..1097553 (+) 720 WP_252289383.1 hydrolase -
  LIT37_RS05585 (LIT37_05595) - 1097625..1098437 (+) 813 WP_252289385.1 hypothetical protein -
  LIT37_RS05590 (LIT37_05600) comZ 1098511..1098693 (+) 183 WP_119118137.1 ComZ family protein Regulator
  LIT37_RS05595 (LIT37_05605) - 1098885..1099820 (+) 936 WP_252289387.1 beta-ketoacyl-ACP synthase III -
  LIT37_RS05600 (LIT37_05610) fabF 1099866..1101104 (+) 1239 WP_252289389.1 beta-ketoacyl-ACP synthase II -
  LIT37_RS05605 (LIT37_05615) - 1101296..1102060 (+) 765 WP_252289391.1 DUF2268 domain-containing putative Zn-dependent protease -
  LIT37_RS05610 (LIT37_05620) - 1102172..1102927 (+) 756 WP_252289394.1 YjbA family protein -
  LIT37_RS05615 (LIT37_05625) - 1103069..1103221 (+) 153 WP_252289396.1 hypothetical protein -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 6828.94 Da        Isoelectric Point: 4.2517

>NTDB_id=619524 LIT37_RS05590 WP_119118137.1 1098511..1098693(+) (comZ) [Peribacillus asahii strain CK1]
MSEDKTLEFMAIAMKYFPEAKAQLEANGIPFSMEMAAPFMDLFKKVMQEAYELGKSDAQQ

Nucleotide


Download         Length: 183 bp        

>NTDB_id=619524 LIT37_RS05590 WP_119118137.1 1098511..1098693(+) (comZ) [Peribacillus asahii strain CK1]
ATGAGTGAAGATAAAACGCTTGAATTTATGGCGATTGCAATGAAGTACTTCCCAGAAGCGAAAGCGCAGTTAGAGGCAAA
CGGCATTCCTTTTTCAATGGAAATGGCGGCTCCGTTTATGGATTTATTTAAAAAAGTCATGCAAGAAGCATATGAGCTAG
GAAAAAGCGACGCTCAGCAGTAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A398B0S8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

66.102

98.333

0.65