Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LIT37_RS00520 Genome accession   NZ_CP085714
Coordinates   97821..99209 (+) Length   462 a.a.
NCBI ID   WP_252288244.1    Uniprot ID   -
Organism   Peribacillus asahii strain CK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 92821..104209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT37_RS00500 (LIT37_00500) - 93068..93529 (+) 462 WP_252288240.1 CtsR family transcriptional regulator -
  LIT37_RS00505 (LIT37_00505) - 93551..94102 (+) 552 WP_252288241.1 UvrB/UvrC motif-containing protein -
  LIT37_RS00510 (LIT37_00510) - 94099..95175 (+) 1077 WP_252288242.1 protein arginine kinase -
  LIT37_RS00515 (LIT37_00515) clpC 95189..97627 (+) 2439 WP_252288243.1 ATP-dependent protease ATP-binding subunit ClpC -
  LIT37_RS00520 (LIT37_00520) radA 97821..99209 (+) 1389 WP_252288244.1 DNA repair protein RadA Machinery gene
  LIT37_RS00525 (LIT37_00525) disA 99213..100286 (+) 1074 WP_252288245.1 DNA integrity scanning diadenylate cyclase DisA -
  LIT37_RS00530 (LIT37_00530) - 100468..101556 (+) 1089 WP_252291234.1 PIN/TRAM domain-containing protein -
  LIT37_RS00535 (LIT37_00535) ispD 101570..102274 (+) 705 WP_286676497.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  LIT37_RS00540 (LIT37_00540) ispF 102280..102759 (+) 480 WP_252288246.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50187.67 Da        Isoelectric Point: 6.8334

>NTDB_id=619518 LIT37_RS00520 WP_252288244.1 97821..99209(+) (radA) [Peribacillus asahii strain CK1]
MAKKKTKFMCQSCGYESPKWMGKCPGCGEWNKMVEEIEIVKPGRRGAFAHSDTQIGTGERIKAAPITTIQTEQEPRIATD
LAELNRALGGGIVQGSLVLIGGDPGIGKSTLLLQVSSQLARKGKKVLYISGEESVKQTKLRADRLGAASENLFVYSETDM
DYIQHAISEVNPDLVIIDSIQTVYQSEVTSAPGSVSQVRECTATLMRIGKTKGIAIFIVGHVTKEGAIAGPRLLEHMVDT
VLYFEGERHHTYRIIRAVKNRFGSTNEMGIFEMKEDGLEEVANPSEIFLEERSQGASGSTVVASMEGTRPVLVEIQALIS
PTSFGNPRRMATGLDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAISIASSFRDKPTRPTDCFIGE
VGLTGEVRRVSRIEQRVQEAAKLGFERVLLPSNNMVGWTVPKEVEVIGVSSVAEALQYALGG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=619518 LIT37_RS00520 WP_252288244.1 97821..99209(+) (radA) [Peribacillus asahii strain CK1]
GTGGCTAAAAAGAAGACAAAATTTATGTGTCAGTCATGTGGATATGAATCACCGAAGTGGATGGGGAAATGTCCTGGGTG
TGGTGAGTGGAACAAGATGGTTGAGGAAATCGAAATTGTAAAGCCGGGGAGAAGGGGAGCGTTTGCTCACTCTGATACAC
AGATTGGGACAGGAGAAAGAATTAAAGCTGCTCCGATTACGACGATTCAAACGGAGCAAGAGCCGCGTATTGCAACAGAT
TTAGCAGAATTAAACCGTGCTCTTGGCGGCGGGATTGTGCAAGGTTCGCTTGTTTTAATTGGCGGTGATCCGGGAATTGG
GAAATCAACTTTGCTTCTCCAAGTATCCTCGCAGCTTGCTCGCAAAGGAAAAAAAGTGCTCTACATTTCTGGAGAAGAAT
CGGTGAAGCAAACGAAGTTAAGAGCAGACCGCCTTGGTGCGGCATCTGAGAATCTATTTGTTTATTCTGAAACAGACATG
GATTATATTCAGCACGCTATTAGTGAAGTGAATCCTGATTTAGTAATCATCGATTCGATTCAAACGGTCTATCAATCCGA
AGTTACATCTGCACCAGGAAGCGTCTCCCAGGTGCGTGAATGTACAGCTACATTAATGCGAATTGGAAAGACAAAGGGCA
TTGCCATTTTTATTGTCGGGCATGTTACGAAAGAAGGGGCGATTGCCGGTCCACGCTTGCTCGAACATATGGTCGATACG
GTGTTATATTTTGAAGGAGAGCGACATCATACATATCGAATTATTCGAGCAGTGAAAAATCGTTTCGGTTCGACAAACGA
GATGGGGATCTTTGAAATGAAAGAAGATGGCTTAGAAGAAGTAGCCAATCCATCTGAGATTTTTCTAGAGGAACGGTCCC
AGGGAGCCTCGGGTTCGACTGTTGTTGCCTCGATGGAAGGAACGAGACCAGTCCTCGTTGAAATTCAAGCTTTAATTTCA
CCAACAAGCTTTGGGAATCCGCGTCGTATGGCTACAGGTCTTGATCATAATCGAGTGTCATTGTTAATGGCAGTATTAGA
GAAGCGTGTCGGTTTATTGCTGCAAAATCAAGATGCTTATTTGAAAGTAGCTGGCGGTGTGAAACTGGATGAGCCGGCAA
TTGATTTAGCGGTTGCGATTAGTATTGCTTCCAGCTTTCGAGATAAACCAACAAGACCAACAGATTGCTTTATCGGTGAA
GTAGGCTTAACAGGGGAAGTTAGACGGGTATCTAGAATTGAGCAACGTGTTCAAGAAGCTGCAAAACTTGGATTTGAGCG
GGTTCTTCTTCCATCCAATAATATGGTTGGTTGGACGGTGCCAAAAGAGGTTGAAGTTATAGGCGTTTCATCCGTAGCAG
AAGCGCTCCAATACGCATTAGGGGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(369-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.322

100

0.775
  radA Streptococcus pneumoniae Rx1

62.009

99.134

0.615
  radA Streptococcus pneumoniae D39

62.009

99.134

0.615
  radA Streptococcus pneumoniae R6

62.009

99.134

0.615
  radA Streptococcus pneumoniae TIGR4

62.009

99.134

0.615
  radA Streptococcus mitis NCTC 12261

62.009

99.134

0.615
  radA Streptococcus mitis SK321

61.79

99.134

0.613