Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LIS82_RS18920 Genome accession   NZ_CP085712
Coordinates   3628962..3630650 (-) Length   562 a.a.
NCBI ID   WP_252239182.1    Uniprot ID   -
Organism   Cytobacillus solani strain F27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3623962..3635650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS82_RS18895 (LIS82_18950) - 3625247..3625480 (+) 234 WP_053476945.1 DUF2627 domain-containing protein -
  LIS82_RS18900 (LIS82_18955) - 3625518..3626240 (-) 723 WP_053476946.1 glycerophosphodiester phosphodiesterase -
  LIS82_RS18905 (LIS82_18960) - 3626268..3626411 (+) 144 WP_075209181.1 YycC family protein -
  LIS82_RS18910 (LIS82_18965) spo0A 3626504..3627292 (-) 789 WP_053476947.1 sporulation transcription factor Spo0A -
  LIS82_RS18915 (LIS82_18970) spoIVB 3627550..3628839 (-) 1290 WP_053476948.1 SpoIVB peptidase -
  LIS82_RS18920 (LIS82_18975) recN 3628962..3630650 (-) 1689 WP_252239182.1 DNA repair protein RecN Machinery gene
  LIS82_RS18925 (LIS82_18980) argR 3630848..3631297 (-) 450 WP_053476950.1 transcriptional regulator ArgR -
  LIS82_RS18930 (LIS82_18985) - 3631509..3632354 (-) 846 WP_053476951.1 TlyA family RNA methyltransferase -
  LIS82_RS18935 (LIS82_18990) dxs 3632357..3634249 (-) 1893 WP_252239183.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LIS82_RS18940 (LIS82_18995) - 3634567..3635460 (-) 894 WP_053476953.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63495.26 Da        Isoelectric Point: 4.9128

>NTDB_id=619491 LIS82_RS18920 WP_252239182.1 3628962..3630650(-) (recN) [Cytobacillus solani strain F27]
MITELSIRNFAIIEALSISFDKGLTVLSGETGAGKSIIIDAIHLLVGGRGSAEFVRHGSEKAEIEGLFQLDDQNHPCFAK
ANEFGIELEDGMAILRRDISSNGKSVCRINGKLVTISTLREIGSTLIDIHGQHEHQELMDETMHLSLLDQFGGEKITSAL
KEYQQVYHTYEQKVKQLKNLSENDQQMAHRLDLIQFQLDEIRSADLKLNEDEEMLEEKRKLSNFERVYDSLQSGYNGLQG
EYKGLDWIGLVMGHIQNAAELDPAYKELAESVSNSFYQLEDAARTIRNEMDFLEYDPARLAEIEDRLNEINQLKRKYGKT
VEEVLEYASKIEEEIETLLNKETHIDQLEKEIASLKKDLLIEAEELSALRKISAQNLTEFIHKELKELYMEKTVFEVQFI
KNTESFMRNGMDKGEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIH
KVAVNSQVLCISHLPQVAAMADTHLYIAKNIIDGRTKTTVKSLNESEKIKEIGRMISGVEITELTKEHAKELLQLAEQLK
IH

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=619491 LIS82_RS18920 WP_252239182.1 3628962..3630650(-) (recN) [Cytobacillus solani strain F27]
ATGATAACTGAATTATCGATAAGAAATTTTGCAATTATTGAAGCCCTATCAATTTCCTTTGATAAGGGCTTAACTGTATT
AAGCGGGGAAACAGGAGCGGGAAAATCAATTATTATTGATGCTATACATTTACTTGTAGGTGGAAGAGGATCTGCTGAGT
TTGTCCGTCATGGATCCGAAAAGGCGGAAATTGAAGGATTATTTCAACTAGACGATCAAAACCATCCATGCTTTGCAAAA
GCAAATGAATTTGGCATTGAGCTTGAGGATGGAATGGCTATTTTACGAAGAGATATTTCTAGCAATGGAAAAAGTGTTTG
TCGAATAAACGGAAAGCTTGTTACAATTTCAACTTTAAGGGAAATTGGCAGTACACTTATTGATATACATGGACAGCATG
AGCATCAAGAGCTCATGGATGAAACGATGCACCTTTCTCTTCTTGATCAATTTGGAGGCGAAAAGATTACTTCGGCTCTT
AAAGAATACCAGCAAGTGTACCATACTTACGAGCAAAAGGTAAAACAATTAAAGAATCTAAGCGAAAATGACCAGCAAAT
GGCACATCGACTTGATTTGATTCAATTTCAGCTTGATGAAATTCGCTCAGCTGACTTGAAGTTAAATGAAGATGAGGAGA
TGCTAGAAGAAAAACGGAAGCTTAGTAACTTTGAACGGGTATATGATTCCTTGCAATCAGGTTACAATGGATTACAAGGA
GAATATAAAGGGCTGGATTGGATTGGGCTAGTGATGGGGCATATTCAAAATGCGGCAGAGCTTGATCCTGCATATAAGGA
ATTAGCCGAGTCTGTTTCTAATAGCTTCTATCAGCTGGAAGACGCAGCACGCACGATTCGTAATGAAATGGATTTTCTTG
AATATGATCCAGCTAGATTAGCCGAAATCGAAGACAGATTGAATGAAATCAATCAATTGAAGCGGAAATATGGCAAAACT
GTAGAAGAAGTCTTGGAATATGCTTCGAAAATTGAGGAAGAAATAGAAACATTGTTAAATAAGGAAACGCATATTGACCA
ACTAGAAAAGGAAATTGCTTCTCTAAAGAAGGACCTTTTAATCGAAGCAGAAGAATTAAGTGCACTTCGGAAAATTTCCG
CACAAAATTTAACAGAATTTATTCACAAAGAATTAAAAGAGCTCTATATGGAGAAAACTGTATTTGAGGTTCAATTTATC
AAAAATACAGAAAGCTTCATGAGGAATGGAATGGATAAAGGTGAATTTTATATTTCTACAAATCCAGGGGAACCATTAAA
GCCCCTTTCTAAAATTGCCTCAGGAGGAGAGCTTTCTAGAATTATGCTTGCGTTAAAGAGTATTTTTTCTAAGCATCAAG
GCGTAACCTCCATCATATTTGATGAAGTTGACACGGGAGTAAGTGGCCGGGTTGCCCAGGCAATTGCAGAAAAGATTCAT
AAAGTGGCTGTTAATTCCCAAGTTTTATGTATTTCTCATTTGCCACAAGTGGCAGCAATGGCTGACACACATTTATATAT
TGCAAAGAATATCATTGATGGACGAACAAAAACAACGGTTAAATCACTAAATGAATCCGAAAAGATTAAAGAAATTGGCC
GGATGATTTCTGGTGTCGAAATTACTGAATTAACGAAGGAACATGCAAAGGAGCTTCTTCAACTTGCAGAGCAATTAAAG
ATACATTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.15

100

0.625