Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LIS82_RS09420 Genome accession   NZ_CP085712
Coordinates   1784700..1786517 (+) Length   605 a.a.
NCBI ID   WP_142107854.1    Uniprot ID   -
Organism   Cytobacillus solani strain F27     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1779700..1791517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS82_RS09400 (LIS82_09410) spxA 1780224..1780619 (+) 396 WP_053475258.1 transcriptional regulator SpxA -
  LIS82_RS09405 (LIS82_09415) mecA 1781012..1781674 (+) 663 WP_053475259.1 adaptor protein MecA -
  LIS82_RS09410 (LIS82_09420) cls 1781758..1783275 (+) 1518 WP_053475260.1 cardiolipin synthase -
  LIS82_RS09415 (LIS82_09425) - 1783371..1784567 (+) 1197 WP_252239967.1 competence protein CoiA family protein -
  LIS82_RS09420 (LIS82_09430) pepF 1784700..1786517 (+) 1818 WP_142107854.1 oligoendopeptidase F Regulator
  LIS82_RS09425 (LIS82_09435) - 1787159..1788046 (-) 888 WP_053475264.1 ClpXP adapter SpxH family protein -
  LIS82_RS09430 (LIS82_09440) - 1788043..1788450 (-) 408 WP_252239968.1 globin -
  LIS82_RS09435 (LIS82_09445) - 1788764..1789402 (-) 639 WP_053475266.1 lytic transglycosylase domain-containing protein -
  LIS82_RS09440 (LIS82_09450) - 1789421..1790008 (-) 588 WP_056683558.1 CYTH domain-containing protein -
  LIS82_RS09445 (LIS82_09455) - 1790133..1790504 (+) 372 WP_056683561.1 hypothetical protein -
  LIS82_RS09450 (LIS82_09460) - 1790585..1791217 (+) 633 WP_053475269.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69649.99 Da        Isoelectric Point: 4.7683

>NTDB_id=619482 LIS82_RS09420 WP_142107854.1 1784700..1786517(+) (pepF) [Cytobacillus solani strain F27]
MANETAVKKLPNRSEISVEDTWKLEDIFASDDAWDKEYKEVEALVPEASQYQGKLGESANQLYEALQYQDHLLERLSKLY
TYAHMRYDQDTTNSFYQGMDDRIKGLYSKAASSLAYIVPELLAVDEGKINAFLEEKEELKVYKHSLEEINLQRPHVLSAE
AESLLAQASEVFGASSNTFGMLNNADLEFPSITDENGEEVEITHGRYIRFLESDDQRVRHDAFKAVYDTYGKFRNTFAST
LSGNVKTNNFNAKVRNYDSARHAALAANNIPESVYDNLVKTVNDNLHLLHRYVKLRKKVLGLEELHMYDLYTPLVKDVKM
EVKYDEAKELILKGLAPLGDDYLNVLKEGFDNRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKSQPYPYGNYSIFVAEVASTCNESLLNDYLLKTIDDEKKRLFLLNHYLEGFRGTVFRQTMFAEFEHLIYQKVQ
NNEALTAESLTKEYYELNKKYFGEEDLVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGNPAVERYIEF
LKAGSSDYPIEVLKKAGVDMTSSKPIEDACKVFEEKLIEMENLLG

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=619482 LIS82_RS09420 WP_142107854.1 1784700..1786517(+) (pepF) [Cytobacillus solani strain F27]
ATGGCTAACGAAACAGCAGTTAAAAAACTTCCGAATAGAAGTGAAATCTCTGTAGAGGATACATGGAAACTGGAGGATAT
TTTTGCTAGTGATGATGCATGGGATAAAGAATACAAGGAAGTAGAAGCTCTAGTACCAGAAGCAAGCCAGTATCAAGGGA
AACTTGGTGAAAGTGCAAATCAATTGTATGAAGCCCTTCAATATCAGGATCACCTCTTAGAACGTCTCTCAAAGCTTTAT
ACATATGCACATATGCGCTATGACCAAGATACAACAAATTCCTTTTATCAGGGGATGGATGACCGGATTAAAGGCTTATA
CTCCAAAGCAGCAAGCAGTCTTGCCTATATTGTTCCAGAACTGCTTGCTGTTGATGAGGGGAAAATTAATGCCTTTTTAG
AGGAAAAGGAAGAGCTGAAAGTTTACAAGCATTCGTTGGAAGAAATTAATCTTCAGCGTCCACATGTTTTATCTGCTGAG
GCGGAAAGTCTACTTGCACAAGCTTCTGAAGTATTTGGTGCATCAAGCAATACGTTCGGCATGCTAAATAATGCAGATCT
TGAGTTCCCGTCTATTACAGATGAAAATGGGGAGGAAGTGGAGATTACTCATGGGCGCTATATCCGCTTTCTTGAAAGTG
ATGATCAGCGAGTAAGACATGATGCGTTCAAAGCTGTCTATGACACATATGGCAAGTTCCGCAATACATTTGCAAGTACA
TTAAGCGGAAATGTGAAAACAAATAATTTTAATGCCAAAGTAAGAAATTATGATTCTGCCCGTCATGCCGCACTTGCAGC
TAATAATATTCCTGAATCTGTCTATGATAATCTTGTAAAAACAGTGAATGATAACCTGCACCTATTACACCGCTATGTCA
AGCTGCGTAAAAAAGTACTTGGTTTAGAAGAGCTTCATATGTACGACCTATATACACCTCTTGTAAAAGATGTGAAAATG
GAAGTGAAATATGATGAAGCAAAGGAATTAATATTAAAAGGATTAGCACCTTTAGGGGACGACTATCTAAATGTCCTAAA
AGAAGGCTTTGATAATCGCTGGGTGGATGTCCATGAAAATAAAGGGAAGCGGAGCGGTGCCTACTCATCCGGAACATACG
GAACTAACCCATATATTTTGATGAACTGGCAGGACAATGTGAACAATCTGTTTACCCTTGCACATGAATTTGGCCATTCT
GTTCATAGTTACTATACAAGGAAATCTCAGCCGTACCCGTATGGAAACTATTCGATTTTTGTTGCTGAAGTTGCGTCCAC
ATGCAATGAATCGCTCCTTAATGATTATTTGCTGAAGACGATCGATGATGAGAAGAAGCGTTTATTCTTGCTAAATCATT
ATTTAGAAGGCTTTAGAGGAACAGTATTCCGTCAAACGATGTTTGCAGAATTTGAGCATCTCATTTATCAGAAGGTACAA
AATAATGAAGCGTTAACCGCTGAATCATTAACAAAGGAATATTATGAGCTGAATAAGAAGTATTTTGGTGAAGAGGATCT
TGTTATTGATGAGGAAATTGGATTAGAGTGGTCTCGAATCCCGCATTTCTATTACAATTACTATGTTTATCAGTATGCAA
CTGGCTTCAGTGCAGCGACAGCACTAAGCAAACAAATTTTAGAAGAAGGCAACCCAGCGGTAGAGCGATATATCGAATTT
CTTAAAGCAGGTAGCTCCGATTACCCAATTGAGGTATTAAAGAAAGCAGGAGTAGATATGACCAGCTCAAAACCAATTGA
GGATGCATGTAAAGTATTTGAGGAAAAATTAATTGAAATGGAAAACCTGCTAGGTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.42

98.347

0.496