Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LIS82_RS09300 Genome accession   NZ_CP085712
Coordinates   1758496..1759455 (+) Length   319 a.a.
NCBI ID   WP_053475239.1    Uniprot ID   A0A0Q3T5B0
Organism   Cytobacillus solani strain F27     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1753496..1764455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS82_RS09280 (LIS82_09290) clpB 1753798..1756404 (+) 2607 WP_053475235.1 ATP-dependent chaperone ClpB -
  LIS82_RS09285 (LIS82_09295) - 1756633..1756824 (-) 192 WP_053475236.1 DUF2929 family protein -
  LIS82_RS09290 (LIS82_09300) - 1757039..1757782 (+) 744 WP_053475237.1 hydrolase -
  LIS82_RS09295 (LIS82_09305) - 1757863..1758363 (+) 501 WP_056683520.1 hypothetical protein -
  LIS82_RS09300 (LIS82_09310) med 1758496..1759455 (+) 960 WP_053475239.1 BMP family ABC transporter substrate-binding protein Regulator
  LIS82_RS09305 (LIS82_09315) comZ 1759478..1759672 (+) 195 WP_053475240.1 ComZ family protein Regulator
  LIS82_RS09310 (LIS82_09320) - 1759867..1760223 (-) 357 WP_252239966.1 hypothetical protein -
  LIS82_RS09315 (LIS82_09325) - 1760443..1761375 (+) 933 WP_056683525.1 beta-ketoacyl-ACP synthase III -
  LIS82_RS09320 (LIS82_09330) fabF 1761443..1762681 (+) 1239 WP_053475243.1 beta-ketoacyl-ACP synthase II -
  LIS82_RS09325 (LIS82_09335) - 1763023..1763802 (+) 780 WP_075209114.1 DUF2268 domain-containing putative Zn-dependent protease -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35744.53 Da        Isoelectric Point: 5.2258

>NTDB_id=619476 LIS82_RS09300 WP_053475239.1 1758496..1759455(+) (med) [Cytobacillus solani strain F27]
MHKLIMRFGMIFLCLLLLASCGQAMSAGNLKKAGLLVPDTVNDQVWGTKGYKGMLKIQSHHNIEVYYKEGMNSQMVVERA
VKEFDQKGVNIIFGHGNEYSEYFNKISNKYPHIHFVSFNGDAENSNTTSLNFEAYAMGFFGGMIAGHMTKTDTIGIIAAY
EWQPEIEGFYEGANYENENVKVIIEYVGNWDDGTQAIQSLDRIFAKNADVIYPAGDGYNVPVIEKVKEKGHYAIGYISDQ
SDLGESAVLTSTIQHVDVLYELVAKKFNEGKLKSGNLSFDFQDDVITLGKFSPNVDKEYIELINAAIEKYKKTGRLPNE

Nucleotide


Download         Length: 960 bp        

>NTDB_id=619476 LIS82_RS09300 WP_053475239.1 1758496..1759455(+) (med) [Cytobacillus solani strain F27]
ATGCATAAATTGATAATGCGTTTTGGGATGATCTTTTTATGCCTTCTTTTATTAGCCTCTTGTGGACAAGCAATGTCTGC
AGGAAATCTTAAGAAAGCTGGCTTGTTAGTCCCGGATACAGTAAATGATCAAGTTTGGGGTACAAAAGGCTATAAAGGAA
TGCTAAAGATACAGTCCCATCATAATATAGAAGTTTACTATAAAGAGGGCATGAACTCCCAAATGGTTGTGGAACGTGCG
GTTAAAGAATTTGATCAAAAAGGGGTAAATATAATTTTTGGTCATGGAAATGAGTATTCGGAGTATTTCAACAAAATATC
GAACAAATATCCACATATCCATTTTGTGAGTTTTAATGGTGACGCTGAAAATTCTAACACAACAAGCTTAAATTTCGAAG
CTTATGCGATGGGGTTTTTCGGAGGAATGATTGCCGGGCATATGACAAAAACGGATACAATTGGAATAATTGCCGCATAC
GAGTGGCAACCTGAAATCGAAGGCTTCTATGAGGGTGCAAATTATGAAAATGAAAATGTCAAAGTAATTATTGAATATGT
TGGCAACTGGGATGATGGCACGCAAGCAATTCAAAGCTTGGATAGGATTTTTGCCAAGAATGCAGATGTTATATACCCTG
CAGGAGATGGATATAATGTTCCAGTCATTGAAAAGGTGAAAGAAAAAGGGCATTATGCAATTGGATATATTTCAGATCAG
TCTGACCTGGGTGAATCAGCAGTGTTAACAAGTACCATTCAGCATGTTGATGTACTCTATGAATTAGTCGCTAAAAAGTT
CAATGAAGGGAAGCTGAAATCGGGAAACCTTTCTTTTGATTTTCAAGATGACGTAATTACATTAGGTAAGTTTAGCCCTA
ATGTTGACAAAGAATATATTGAGTTAATTAATGCCGCAATTGAAAAGTATAAGAAAACTGGAAGATTGCCTAATGAATGA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(31-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q3T5B0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

50.637

98.433

0.498