Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LIS82_RS05435 Genome accession   NZ_CP085712
Coordinates   1059877..1060674 (+) Length   265 a.a.
NCBI ID   WP_056682777.1    Uniprot ID   A0A0Q3QKF5
Organism   Cytobacillus solani strain F27     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 1054877..1065674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS82_RS05410 (LIS82_05410) - 1056709..1057377 (-) 669 WP_053478897.1 VWA domain-containing protein -
  LIS82_RS05415 (LIS82_05415) - 1057810..1058313 (+) 504 WP_053478896.1 DoxX family protein -
  LIS82_RS05420 (LIS82_05420) - 1058370..1058561 (-) 192 WP_053478895.1 YfhD family protein -
  LIS82_RS05425 (LIS82_05425) - 1058651..1058785 (-) 135 WP_142108074.1 YfhE family protein -
  LIS82_RS05430 (LIS82_05430) - 1058869..1059771 (-) 903 WP_142108073.1 TIGR01777 family oxidoreductase -
  LIS82_RS05435 (LIS82_05435) recX 1059877..1060674 (+) 798 WP_056682777.1 recombination regulator RecX Regulator
  LIS82_RS05440 (LIS82_05440) - 1060927..1061601 (-) 675 WP_053478891.1 SDR family oxidoreductase -
  LIS82_RS05445 (LIS82_05445) - 1061743..1062057 (+) 315 WP_142108071.1 YfhH family protein -
  LIS82_RS05450 (LIS82_05450) - 1062244..1062387 (-) 144 WP_075209089.1 YpzG family protein -
  LIS82_RS05455 (LIS82_05455) - 1062424..1062594 (-) 171 WP_053478889.1 small, acid-soluble spore protein K -
  LIS82_RS05460 (LIS82_05460) - 1062715..1062984 (+) 270 WP_053478888.1 YfhJ family protein -
  LIS82_RS05465 (LIS82_05465) - 1063019..1063999 (-) 981 WP_053478887.1 metal-dependent hydrolase -
  LIS82_RS05470 (LIS82_05470) mutY 1064216..1065319 (+) 1104 WP_231690188.1 A/G-specific adenine glycosylase -
  LIS82_RS05475 (LIS82_05475) - 1065338..1065532 (-) 195 WP_053478885.1 hypothetical protein -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31414.99 Da        Isoelectric Point: 5.5840

>NTDB_id=619472 LIS82_RS05435 WP_056682777.1 1059877..1060674(+) (recX) [Cytobacillus solani strain F27]
MPTITRITVQQKKTDRYNIFLDEKYAFSVDEDVLIKHQLKKGMELDEFSLSEIAYQDDIRKSYNLAIQYLARRMRSEAEV
RKALKDKEVDESIVQEVIHRLYEYSFLNDEEFAIAFVRTAMNTTDKGTDVIRRELKEKGISDNILERALKEYPFEQELDT
AIKLCEKFVQKNTRDSSRVMKQKLEQMLFRKGYSLGIIQTALSEMEMEKAEDEEMAALRIHAEKAHRKYEKLEGFEYEKK
MKQALFRKGFAFELIEQVLSQINEQ

Nucleotide


Download         Length: 798 bp        

>NTDB_id=619472 LIS82_RS05435 WP_056682777.1 1059877..1060674(+) (recX) [Cytobacillus solani strain F27]
ATGCCTACGATAACAAGAATTACAGTGCAGCAGAAAAAGACGGACCGATATAATATTTTTTTAGATGAAAAATATGCATT
TAGTGTGGATGAGGATGTGTTGATTAAGCATCAGCTCAAAAAAGGAATGGAGCTGGATGAATTTTCACTTTCTGAAATTG
CCTATCAAGACGATATTAGAAAATCATACAACTTAGCGATTCAGTATTTAGCAAGAAGAATGCGCTCTGAAGCTGAGGTT
CGAAAAGCTCTCAAGGATAAAGAAGTCGATGAAAGCATCGTTCAAGAGGTGATTCATCGATTATACGAGTACAGCTTTTT
AAATGACGAGGAATTTGCGATTGCCTTTGTACGAACAGCAATGAATACGACTGATAAAGGTACAGATGTGATTCGCAGGG
AATTAAAGGAAAAGGGGATTTCGGATAATATCTTAGAACGTGCTCTGAAAGAATATCCGTTTGAACAGGAACTAGATACA
GCGATTAAGCTTTGCGAGAAGTTTGTCCAAAAAAACACACGAGATTCCTCAAGGGTCATGAAACAAAAGCTTGAACAAAT
GCTTTTCCGAAAGGGATATTCTTTAGGTATCATTCAGACTGCTCTATCAGAAATGGAGATGGAAAAAGCTGAGGATGAGG
AAATGGCAGCATTGAGAATACACGCGGAAAAAGCGCATAGGAAATATGAAAAGCTTGAAGGCTTCGAGTATGAAAAGAAA
ATGAAACAGGCACTTTTCCGAAAAGGCTTTGCCTTTGAATTGATTGAACAGGTTTTATCGCAGATTAACGAGCAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q3QKF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

49.042

98.491

0.483