Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LIS82_RS02520 Genome accession   NZ_CP085712
Coordinates   449275..450231 (+) Length   318 a.a.
NCBI ID   WP_053477902.1    Uniprot ID   A0A0Q3VFC9
Organism   Cytobacillus solani strain F27     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444275..455231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS82_RS02500 (LIS82_02505) - 445146..446255 (+) 1110 WP_053477905.1 dipeptide epimerase -
  LIS82_RS02505 (LIS82_02510) - 446239..447153 (+) 915 WP_281176484.1 C40 family peptidase -
  LIS82_RS02510 (LIS82_02515) - 447172..448182 (+) 1011 WP_053477903.1 oligopeptide/dipeptide ABC transporter ATP-binding protein -
  LIS82_RS02515 (LIS82_02520) - 448179..448973 (+) 795 WP_231690149.1 serine hydrolase -
  LIS82_RS02520 (LIS82_02525) ceuB 449275..450231 (+) 957 WP_053477902.1 ABC transporter permease Machinery gene
  LIS82_RS02525 (LIS82_02530) - 450218..451174 (+) 957 WP_053477901.1 iron chelate uptake ABC transporter family permease subunit -
  LIS82_RS02530 (LIS82_02535) - 451171..451938 (+) 768 WP_053477900.1 ABC transporter ATP-binding protein -
  LIS82_RS02535 (LIS82_02540) - 452202..453245 (+) 1044 WP_053477899.1 siderophore ABC transporter substrate-binding protein -
  LIS82_RS02540 (LIS82_02545) - 453482..454108 (-) 627 WP_053477898.1 pyridoxamine 5'-phosphate oxidase family protein -
  LIS82_RS02545 (LIS82_02550) - 454261..454698 (-) 438 WP_053477897.1 DNA starvation/stationary phase protection protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34872.07 Da        Isoelectric Point: 9.5543

>NTDB_id=619468 LIS82_RS02520 WP_053477902.1 449275..450231(+) (ceuB) [Cytobacillus solani strain F27]
MKLWMLIIATIVLSFISLFIGAIDIKVSDLLDWHSDETQIFLISRVPRLMAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISMLFLTNVTYTQQIIFSFAFALAGTFIFMQILDRIKFKDVIFVPLIGIMYGNILSSITTFFAYEADLL
QNISSWLMGSFTLVIAGRYELLYVSVPAVILAYIYANKFTVAGMGEDFAKNLGLSYKVVLNLGLILVAIISTTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAILGVVFLLICDIIGRIVIHPYEIPVNVTVAVIGSAIFLIMLFRGRAYAKK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=619468 LIS82_RS02520 WP_053477902.1 449275..450231(+) (ceuB) [Cytobacillus solani strain F27]
ATGAAACTATGGATGTTAATTATTGCAACTATAGTCCTGTCATTTATATCGCTATTTATAGGTGCAATTGATATTAAGGT
AAGTGACTTGCTCGATTGGCATTCGGATGAGACACAAATTTTCTTAATTAGTCGAGTGCCACGTTTAATGGCTATTATAT
TGGCGGGAGCTGGAATGAGTATTGCAGGCTTAATTATGCAGTCTTTAAGCCGAAATAAATTTGTATCGCCAACGACTGCT
GGTACGTTAGATGCAGCAAAACTAGGTATTTTAATCTCGATGCTGTTCTTAACAAATGTAACGTATACGCAGCAAATTAT
TTTTAGCTTCGCATTTGCTTTAGCAGGTACATTTATTTTTATGCAAATCTTAGATCGTATTAAATTTAAGGATGTCATTT
TTGTTCCGTTAATTGGAATTATGTATGGAAATATTTTGTCATCTATTACAACGTTTTTTGCATATGAAGCAGATCTTCTT
CAAAATATTTCTTCTTGGTTAATGGGGAGCTTTACATTAGTTATTGCTGGCCGCTATGAACTGTTATATGTAAGTGTCCC
GGCGGTTATTTTAGCGTATATTTATGCGAATAAATTTACAGTCGCAGGAATGGGCGAAGATTTTGCAAAAAACTTAGGCT
TAAGTTATAAGGTAGTTTTAAATTTAGGTCTAATCCTTGTTGCGATTATTTCTACAACTGTCGTACTAACTGTCGGAGTC
ATTCCGTTTTTAGGTTTAATTGTACCTAATATTGTCTCGCTTTACTTAGGGGATAATTTACGAAAAACGATTCCACACAC
AGCAATATTAGGGGTTGTATTTCTATTAATATGTGACATTATTGGACGTATTGTCATTCACCCATATGAGATTCCGGTTA
ATGTGACTGTGGCAGTAATCGGTAGTGCGATCTTCTTAATTATGTTATTTAGGGGGAGAGCATATGCGAAAAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q3VFC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.38

99.371

0.55