Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   LIT36_RS12965 Genome accession   NZ_CP085706
Coordinates   2655587..2656339 (-) Length   250 a.a.
NCBI ID   WP_095315577.1    Uniprot ID   -
Organism   Bacillus velezensis strain CK17     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2650587..2661339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT36_RS12940 (LIT36_12955) mreC 2651023..2651886 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  LIT36_RS12945 (LIT36_12960) mreB 2651917..2652930 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  LIT36_RS12950 (LIT36_12965) radC 2653022..2653717 (-) 696 WP_003152646.1 DNA repair protein RadC -
  LIT36_RS12955 (LIT36_12970) - 2653749..2654318 (-) 570 WP_003152645.1 Maf family protein -
  LIT36_RS12960 (LIT36_12975) - 2654459..2655460 (-) 1002 WP_003152644.1 SPOR domain-containing protein -
  LIT36_RS12965 (LIT36_12980) comC 2655587..2656339 (-) 753 WP_095315577.1 A24 family peptidase Machinery gene
  LIT36_RS12970 (LIT36_12985) - 2656479..2657771 (-) 1293 WP_003152642.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  LIT36_RS12975 (LIT36_12990) - 2657830..2660472 (-) 2643 WP_003152640.1 valine--tRNA ligase -
  LIT36_RS12980 (LIT36_12995) - 2660925..2661116 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27094.76 Da        Isoelectric Point: 9.4295

>NTDB_id=619440 LIT36_RS12965 WP_095315577.1 2655587..2656339(-) (comC) [Bacillus velezensis strain CK17]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSSCSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLGSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGSLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=619440 LIT36_RS12965 WP_095315577.1 2655587..2656339(-) (comC) [Bacillus velezensis strain CK17]
GTGCTTTTAATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTCCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGGTTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCGGTATACGGTATGTGCGCCGCAGCCCGGGGCAGTCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584