Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LIT36_RS12180 Genome accession   NZ_CP085706
Coordinates   2507059..2507826 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus velezensis strain CK17     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2502059..2512826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT36_RS12160 (LIT36_12170) - 2502261..2503073 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  LIT36_RS12165 (LIT36_12175) ccpN 2503099..2503737 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  LIT36_RS12170 (LIT36_12180) glyS 2503838..2505877 (-) 2040 WP_003152986.1 glycine--tRNA ligase subunit beta -
  LIT36_RS12175 (LIT36_12185) glyQ 2505870..2506757 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  LIT36_RS12180 (LIT36_12190) recO 2507059..2507826 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  LIT36_RS12185 (LIT36_12195) - 2507863..2508006 (-) 144 WP_007408286.1 YqzL family protein -
  LIT36_RS12190 (LIT36_12200) era 2508162..2509067 (-) 906 WP_003152978.1 GTPase Era -
  LIT36_RS12195 (LIT36_12205) - 2509048..2509458 (-) 411 WP_003152976.1 cytidine deaminase -
  LIT36_RS12200 (LIT36_12210) - 2509582..2509956 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  LIT36_RS12205 (LIT36_12215) ybeY 2509937..2510410 (-) 474 WP_015387991.1 rRNA maturation RNase YbeY -
  LIT36_RS12210 (LIT36_12220) - 2510411..2512543 (-) 2133 WP_003152972.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=619433 LIT36_RS12180 WP_003152982.1 2507059..2507826(-) (recO) [Bacillus velezensis strain CK17]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=619433 LIT36_RS12180 WP_003152982.1 2507059..2507826(-) (recO) [Bacillus velezensis strain CK17]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894