Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LIT36_RS05605 Genome accession   NZ_CP085706
Coordinates   1081613..1082566 (+) Length   317 a.a.
NCBI ID   WP_003155063.1    Uniprot ID   -
Organism   Bacillus velezensis strain CK17     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1076613..1087566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT36_RS05580 (LIT36_05595) argF 1078430..1079401 (+) 972 WP_014304779.1 ornithine carbamoyltransferase -
  LIT36_RS05585 (LIT36_05600) - 1079477..1079656 (+) 180 WP_003155070.1 YjzC family protein -
  LIT36_RS05590 (LIT36_05605) - 1079693..1079878 (-) 186 WP_003155069.1 YjzD family protein -
  LIT36_RS05595 (LIT36_05610) - 1080139..1080874 (+) 736 Protein_1038 hypothetical protein -
  LIT36_RS05600 (LIT36_05615) - 1080957..1081523 (+) 567 WP_041481852.1 hypothetical protein -
  LIT36_RS05605 (LIT36_05620) med 1081613..1082566 (+) 954 WP_003155063.1 BMP family ABC transporter substrate-binding protein Regulator
  LIT36_RS05610 (LIT36_05625) comZ 1082579..1082770 (+) 192 WP_003155061.1 ComZ family protein Regulator
  LIT36_RS05615 (LIT36_05630) - 1082800..1083018 (-) 219 WP_003155059.1 hypothetical protein -
  LIT36_RS05620 (LIT36_05635) - 1083186..1084124 (+) 939 WP_003155057.1 beta-ketoacyl-ACP synthase III -
  LIT36_RS05625 (LIT36_05640) fabF 1084147..1085385 (+) 1239 WP_003155056.1 beta-ketoacyl-ACP synthase II -
  LIT36_RS05630 (LIT36_05645) - 1085469..1086254 (+) 786 WP_012117278.1 DUF2268 domain-containing protein -
  LIT36_RS05635 (LIT36_05650) - 1086428..1087414 (+) 987 WP_031378493.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35345.94 Da        Isoelectric Point: 4.5594

>NTDB_id=619406 LIT36_RS05605 WP_003155063.1 1081613..1082566(+) (med) [Bacillus velezensis strain CK17]
MITRLVMIFSVLLLLSGCTQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGTLKSGDHDFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNQTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=619406 LIT36_RS05605 WP_003155063.1 1081613..1082566(+) (med) [Bacillus velezensis strain CK17]
TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGCACACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTCCCCGATACCATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCACCTTATGGGAGAAGCAA
TGGGTTTTTTCGGGGGAATGACGGCCGCCCATATGTCAAAAACCAATGAGGTCGGTGTCATCGCCTCCTTTTTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAGGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAGCAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TACGCTCAAGAGCGGAGATCACGACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCGCTGGTGGACA
AAGCGTTTCAAGACAAAATCTCAGACCTTGTCAAAACGTATAATCAAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

78.549

100

0.785