Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LIT36_RS01980 Genome accession   NZ_CP085706
Coordinates   385885..386838 (+) Length   317 a.a.
NCBI ID   WP_003156332.1    Uniprot ID   -
Organism   Bacillus velezensis strain CK17     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 380885..391838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT36_RS01955 (LIT36_01965) - 380927..382360 (+) 1434 WP_161620115.1 HAMP domain-containing sensor histidine kinase -
  LIT36_RS01960 (LIT36_01970) rapC 382513..383661 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  LIT36_RS01965 (LIT36_01975) phrC 383645..383764 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  LIT36_RS01970 (LIT36_01980) - 383914..384009 (-) 96 WP_021495118.1 YjcZ family sporulation protein -
  LIT36_RS01975 (LIT36_01985) - 384104..385468 (-) 1365 WP_252206687.1 aspartate kinase -
  LIT36_RS01980 (LIT36_01990) ceuB 385885..386838 (+) 954 WP_003156332.1 ABC transporter permease Machinery gene
  LIT36_RS01985 (LIT36_01995) - 386828..387775 (+) 948 WP_252206688.1 iron chelate uptake ABC transporter family permease subunit -
  LIT36_RS01990 (LIT36_02000) - 387769..388527 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  LIT36_RS01995 (LIT36_02005) - 388549..389493 (+) 945 WP_003156329.1 siderophore ABC transporter substrate-binding protein -
  LIT36_RS02000 (LIT36_02010) - 389535..390959 (-) 1425 WP_063636989.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=619396 LIT36_RS01980 WP_003156332.1 385885..386838(+) (ceuB) [Bacillus velezensis strain CK17]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=619396 LIT36_RS01980 WP_003156332.1 385885..386838(+) (ceuB) [Bacillus velezensis strain CK17]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGCCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAATATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTTAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTCTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
AGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGGAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533