Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LIT36_RS01765 Genome accession   NZ_CP085706
Coordinates   324661..325098 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain CK17     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 319661..330098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT36_RS01725 (LIT36_01735) - 320240..320401 (-) 162 Protein_299 hypothetical protein -
  LIT36_RS01730 (LIT36_01740) - 320518..321720 (+) 1203 WP_025853783.1 GTP-binding protein -
  LIT36_RS01735 (LIT36_01745) - 321785..322921 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  LIT36_RS01740 (LIT36_01750) - 322936..323370 (+) 435 WP_003156592.1 RDD family protein -
  LIT36_RS01745 (LIT36_01755) - 323442..323762 (+) 321 WP_014304315.1 YckD family protein -
  LIT36_RS01750 (LIT36_01760) - 323866..323982 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  LIT36_RS01755 (LIT36_01765) - 323981..324200 (+) 220 Protein_305 family 1 glycosylhydrolase -
  LIT36_RS01760 (LIT36_01770) nin/comJ 324241..324639 (-) 399 WP_043866822.1 competence protein ComJ Regulator
  LIT36_RS01765 (LIT36_01775) nucA/comI 324661..325098 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LIT36_RS01770 (LIT36_01780) hxlB 325457..326014 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  LIT36_RS01775 (LIT36_01785) hxlA 326011..326646 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  LIT36_RS01780 (LIT36_01790) - 326878..327240 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=619392 LIT36_RS01765 WP_003156588.1 324661..325098(-) (nucA/comI) [Bacillus velezensis strain CK17]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=619392 LIT36_RS01765 WP_003156588.1 324661..325098(-) (nucA/comI) [Bacillus velezensis strain CK17]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641