Detailed information NTG0619366

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LJX93_RS03330
• Genome accession: NZ_CP085704
• Coordinates: 730657..731523 (-)
• Length: 288 a.a.
• NCBI ID: WP_227696750.1
• Uniprot ID: -
• Organism: Pseudomonas sp. HN2-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 725657..736523

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJX93_RS03295 (LJX93_03295)	-	726325..727620 (-)	1296	WP_033701435.1	NAD(P)/FAD-dependent oxidoreductase	-
LJX93_RS03300 (LJX93_03300)	-	727705..727878 (-)	174	WP_013970765.1	DUF3094 family protein	-
LJX93_RS03305 (LJX93_03305)	-	728011..728640 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
LJX93_RS03310 (LJX93_03310)	-	728696..728857 (-)	162	WP_227696749.1	hypothetical protein	-
LJX93_RS03315 (LJX93_03315)	-	728968..729651 (+)	684	WP_033701431.1	energy-coupling factor ABC transporter permease	-
LJX93_RS03320 (LJX93_03320)	yacG	729837..730037 (-)	201	WP_047582821.1	DNA gyrase inhibitor YacG	-
LJX93_RS03325 (LJX93_03325)	coaE	730034..730657 (-)	624	WP_047582819.1	dephospho-CoA kinase	-
LJX93_RS03330 (LJX93_03330)	pilD	730657..731523 (-)	867	WP_227696750.1	prepilin peptidase	Machinery gene
LJX93_RS03335 (LJX93_03335)	-	731526..732731 (-)	1206	WP_227696752.1	type II secretion system F family protein	-
LJX93_RS03340 (LJX93_03340)	-	732949..733359 (+)	411	WP_227696753.1	pilin	-
LJX93_RS03350 (LJX93_03350)	arfB	733979..734392 (+)	414	WP_033701529.1	alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB	-
LJX93_RS27335 (LJX93_03355)	-	734560..734784 (-)	225	WP_227697289.1	HNH endonuclease signature motif containing protein	-
LJX93_RS03360 (LJX93_03360)	-	735302..735571 (+)	270	WP_081874756.1	HNH endonuclease	-
LJX93_RS03365 (LJX93_03365)	-	736065..736292 (+)	228	WP_095063997.1	hypothetical protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32043.17 Da
• Isoelectric Point: 7.2546

>NTDB_id=619366 LJX93_RS03330 WP_227696750.1 730657..731523(-) (pilD) [Pseudomonas sp. HN2-3]
MTLWTFLAMEPAYFITLATVLGLLVGSFLNVVVYRLPIMLERQWQREAHEVLGLPVTEHERFDLCLPASQCTQCGHRIRA
WENLPVLSYLALRGRCSACKQRISVRYPLVEVGCALLSMVVAWRYGASVEALVLLPLTWSLLALSLIDHDQQLLPDAIVL
PGLWLGLIVNYFGVWVPLPDAVCGAVVGYLSLWTVYWLFKLVTGKEGMGYGDFKLLALLGAWGGWQVLPLSLLLSSVLGA
LVGVYLLRVRKHSMGTAMPFGPYLAIAGWIAVLWGDEIYASYMQLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=619366 LJX93_RS03330 WP_227696750.1 730657..731523(-) (pilD) [Pseudomonas sp. HN2-3]
ATGACTTTATGGACCTTCCTGGCGATGGAGCCGGCTTACTTCATCACCCTGGCGACCGTGCTCGGCCTGTTGGTGGGCAG
TTTTCTCAACGTTGTGGTGTACCGCCTGCCGATCATGCTGGAGCGCCAATGGCAGCGTGAGGCACACGAAGTGCTGGGGC
TGCCGGTGACCGAGCACGAGCGTTTCGACCTGTGCCTGCCGGCCTCGCAGTGCACGCAGTGCGGGCACCGGATACGGGCG
TGGGAAAACCTCCCGGTGCTCAGCTACCTGGCGTTGCGCGGGCGCTGTTCGGCCTGCAAACAGCGCATCAGCGTGCGTTA
CCCGTTGGTCGAGGTGGGTTGTGCGCTGCTGTCGATGGTGGTGGCCTGGCGCTACGGGGCCAGCGTCGAGGCACTGGTGC
TGCTGCCGCTGACCTGGAGCTTGCTGGCCCTGAGCTTGATCGACCATGACCAACAACTACTGCCCGATGCCATCGTGCTG
CCGGGGCTGTGGCTTGGGCTGATCGTCAATTACTTCGGGGTATGGGTGCCCTTGCCCGATGCCGTATGCGGCGCGGTGGT
CGGGTACCTCAGCCTGTGGACGGTGTACTGGTTGTTCAAGCTGGTTACCGGCAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTGTTGGCGCTGCTCGGCGCCTGGGGTGGCTGGCAGGTGCTGCCGCTGTCCTTGTTGCTGTCGTCGGTGCTTGGGGCG
CTGGTTGGGGTGTACCTGCTGCGGGTGCGCAAGCATTCCATGGGTACGGCCATGCCATTTGGGCCCTATCTGGCAATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCTTACATGCAACTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.986	95.833	0.517
pilD	Acinetobacter baumannii D1279779	50.178	97.569	0.49
pilD	Acinetobacter nosocomialis M2	49.466	97.569	0.483
pilD	Vibrio campbellii strain DS40M4	50	95.833	0.479
pilD	Neisseria gonorrhoeae MS11	49.818	95.486	0.476