Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   VAPA_RS23385 Genome accession   NC_022247
Coordinates   5026179..5026577 (-) Length   132 a.a.
NCBI ID   WP_021012487.1    Uniprot ID   T1XFY8
Organism   Variovorax paradoxus B4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5021179..5031577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAPA_RS23370 (VAPA_1c47630) - 5022905..5025217 (-) 2313 WP_021012485.1 methyl-accepting chemotaxis protein -
  VAPA_RS23375 (VAPA_1c47640) - 5025260..5025793 (-) 534 WP_021012486.1 chemotaxis protein CheW -
  VAPA_RS23380 (VAPA_1c47650) - 5025813..5026178 (-) 366 WP_015867389.1 response regulator -
  VAPA_RS23385 (VAPA_1c47660) pilG 5026179..5026577 (-) 399 WP_021012487.1 response regulator Regulator
  VAPA_RS23390 (VAPA_1c47670) - 5026659..5026829 (-) 171 WP_007838397.1 rubredoxin -
  VAPA_RS23395 (VAPA_1c47680) thiD 5026940..5027905 (+) 966 WP_021012488.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  VAPA_RS23400 (VAPA_1c47690) hemL 5027905..5029191 (+) 1287 WP_021012489.1 glutamate-1-semialdehyde 2,1-aminomutase -
  VAPA_RS23405 (VAPA_1c47700) - 5029203..5030603 (-) 1401 WP_021012490.1 amidase family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14706.88 Da        Isoelectric Point: 7.3215

>NTDB_id=61936 VAPA_RS23385 WP_021012487.1 5026179..5026577(-) (pilG) [Variovorax paradoxus B4]
MGPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
NVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGIVQQEVQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=61936 VAPA_RS23385 WP_021012487.1 5026179..5026577(-) (pilG) [Variovorax paradoxus B4]
ATGGGGCCGAATGGATCAGGTTACAAGGTGCTTGTCATCGACGACAGCAATACGATCCGGCGCAGTGCCGAAATATTTCT
GAAGCAGGGCGGGCACGAGGTTCTTCTCGCGGAAGACGGCTTCGACGCGCTCTCCAAGGTTAACGACCACAAGCCGCATC
TGATTTTCTGCGACATCCTGATGCCGCGCCTGGACGGCTACCAGACCTGCGCCATCATCAAGCGCAACGCTCATTTCTCC
AATGTTCCGGTCGTGATGCTTTCTTCGAAGGATGGCGTCTTTGACAAGGCTCGCGGCCGCATGGTCGGGTCGCAAGACTA
CCTGACCAAACCTTTCACCAAAGACCAGCTGCTGCAGGCCGTGCAGCAGTTTGGCATCGTTCAACAGGAAGTGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1XFY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.281

86.364

0.538

Multiple sequence alignment