Detailed information NTG0061935

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: VAPA_RS22425
• Genome accession: NC_022247
• Coordinates: 4794477..4795715 (+)
• Length: 412 a.a.
• NCBI ID: WP_080666824.1
• Uniprot ID: -
• Organism: Variovorax paradoxus B4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4789477..4800715

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VAPA_RS22405 (VAPA_1c45430)	-	4789970..4790605 (-)	636	WP_021009051.1	LysE/ArgO family amino acid transporter	-
VAPA_RS22410 (VAPA_1c45440)	-	4790687..4791604 (+)	918	WP_021009052.1	LysR family transcriptional regulator ArgP	-
VAPA_RS22415 (VAPA_1c45450)	-	4791617..4792963 (-)	1347	WP_021009053.1	M16 family metallopeptidase	-
VAPA_RS22420 (VAPA_1c45460)	-	4792981..4794447 (-)	1467	WP_021009054.1	M16 family metallopeptidase	-
VAPA_RS22425 (VAPA_1c45470)	pilA	4794477..4795715 (+)	1239	WP_080666824.1	signal recognition particle-docking protein FtsY	Machinery gene
VAPA_RS35435 (VAPA_1c45480)	-	4795752..4796789 (-)	1038	WP_021009056.1	hypothetical protein	-
VAPA_RS22435 (VAPA_1c45490)	-	4796921..4798714 (-)	1794	WP_041946200.1	hybrid sensor histidine kinase/response regulator	-
VAPA_RS22440 (VAPA_1c45500)	-	4798726..4799439 (-)	714	WP_041946569.1	response regulator transcription factor	-
VAPA_RS22445 (VAPA_1c45510)	-	4799608..4800072 (+)	465	WP_021009059.1	DUF962 domain-containing protein	-

Sequence

Protein

• Length: 412 a.a.
• Molecular weight: 42736.30 Da
• Isoelectric Point: 5.3267

>NTDB_id=61935 VAPA_RS22425 WP_080666824.1 4794477..4795715(+) (pilA) [Variovorax paradoxus B4]
MFSFFKKKPPAESPAAPAPSPAAEPAPAPEPALAPAAAPARSVFSPSSWFGSKPAAEEAVPPPAAPATAPSVAPPPPPAA
PAAVPNVAPVPAPAPAELATPLPALVAEAAMPAERKGWFDKLKTGLRKTGTGIQAVFVNAQIDEALYEELESALLMADAG
VKATEYLLDDLRGRVKRQMATDAAQVKRLLADAITDLLQPLEKPLVIGQFTPTVIMVAGVNGAGKTTSIGKLTKHLANEG
ASVLLAAADTFRAAAREQLLVWADRNTVEIVSQEGGDPSAVSFDAVTAGKARGKDVVLVDTAGRLPTQLHLMDELKKIKR
VVTKADATAPHEVLLVIDGNTGQNALAQVRAFDETLGLTGLVVTKLDGTAKGGVLCAIARERPVPVYFIGVGEKLEDLET
FNAREFALALLG

Nucleotide

• Length: 1239 bp

>NTDB_id=61935 VAPA_RS22425 WP_080666824.1 4794477..4795715(+) (pilA) [Variovorax paradoxus B4]
ATGTTCAGTTTCTTCAAGAAAAAACCGCCTGCCGAATCCCCGGCCGCGCCGGCGCCCTCCCCGGCCGCCGAGCCGGCACC
TGCCCCCGAGCCCGCGCTTGCGCCCGCTGCCGCACCCGCGCGCTCGGTGTTCTCTCCGTCGAGCTGGTTCGGCTCGAAGC
CCGCCGCGGAGGAAGCGGTGCCCCCGCCTGCAGCGCCAGCCACAGCGCCATCGGTAGCGCCCCCTCCGCCACCGGCCGCC
CCCGCCGCTGTGCCGAACGTCGCACCGGTGCCAGCGCCGGCGCCTGCCGAGCTGGCCACCCCCCTGCCCGCCCTTGTCGC
CGAGGCTGCGATGCCGGCCGAGCGCAAGGGCTGGTTCGACAAGCTCAAGACCGGCCTGCGCAAGACCGGCACCGGCATCC
AGGCAGTATTCGTCAACGCCCAGATCGACGAAGCGCTGTACGAGGAGCTCGAATCGGCCCTGCTGATGGCCGATGCCGGC
GTCAAGGCCACCGAATACCTGCTCGACGACCTGCGCGGCCGCGTCAAGCGCCAGATGGCGACCGATGCGGCACAAGTGAA
GCGGCTGCTGGCCGACGCCATCACCGACCTGCTCCAGCCGCTCGAAAAACCGCTGGTGATCGGCCAGTTCACGCCGACGG
TGATCATGGTGGCGGGCGTCAACGGCGCCGGCAAGACCACCTCGATCGGCAAGCTCACCAAGCACCTGGCCAACGAGGGC
GCCTCGGTCCTGCTGGCGGCAGCCGACACCTTCCGCGCGGCGGCGCGCGAGCAGTTGCTGGTCTGGGCCGACCGCAACAC
GGTCGAGATCGTGAGCCAGGAAGGCGGCGACCCATCGGCAGTGAGCTTCGACGCGGTCACGGCCGGCAAGGCGCGCGGCA
AGGACGTGGTGCTGGTCGACACCGCCGGCCGGCTGCCGACGCAGCTGCACCTGATGGACGAGCTCAAGAAGATCAAGCGC
GTCGTCACCAAGGCCGACGCCACCGCGCCGCACGAGGTGCTGCTGGTGATCGACGGCAACACCGGGCAGAACGCCCTGGC
GCAGGTCAGGGCCTTCGACGAGACGCTGGGCCTCACCGGCCTGGTGGTGACCAAGCTCGACGGCACGGCCAAGGGCGGCG
TGCTCTGCGCCATCGCGCGCGAGCGGCCGGTCCCGGTCTACTTCATCGGCGTGGGCGAGAAGCTGGAAGACCTCGAGACC
TTCAACGCGCGCGAGTTTGCCCTGGCGCTGCTGGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (212-411)

• SRP54-type protein, helical bundle domain (SRP54_N) (130-193)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	50	100	0.51