Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   GDK20_RS01850 Genome accession   NZ_AP019545
Coordinates   410597..411442 (+) Length   281 a.a.
NCBI ID   WP_001557587.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KG-22     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 405597..416442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDK20_RS01835 (SAKG22_03540) - 405865..407706 (-) 1842 WP_000077317.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -
  GDK20_RS01840 (SAKG22_03550) metC 407675..408835 (-) 1161 WP_000175854.1 cystathionine beta-lyase MetC -
  GDK20_RS01845 (SAKG22_03560) - 408832..409935 (-) 1104 WP_000655692.1 PLP-dependent transferase -
  GDK20_RS01850 (SAKG22_03580) spo0J 410597..411442 (+) 846 WP_001557587.1 ParB/RepB/Spo0J family partition protein Regulator
  GDK20_RS01855 (SAKG22_03590) - 411596..412477 (+) 882 WP_000373073.1 mechanosensitive ion channel family protein -
  GDK20_RS01860 (SAKG22_03600) - 412507..412710 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  GDK20_RS01865 (SAKG22_03610) ychF 412722..413819 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  GDK20_RS01870 (SAKG22_03620) - 413905..414096 (-) 192 WP_001052484.1 hypothetical protein -
  GDK20_RS01875 (SAKG22_03630) rpsF 414340..414636 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  GDK20_RS01880 (SAKG22_03640) ssbA 414657..415160 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  GDK20_RS01885 (SAKG22_03650) rpsR 415212..415454 (+) 243 WP_000897044.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32841.83 Da        Isoelectric Point: 10.0091

>NTDB_id=61931 GDK20_RS01850 WP_001557587.1 410597..411442(+) (spo0J) [Staphylococcus aureus strain KG-22]
MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGTKVDISIKKSVGKISFEFDSQDDFVRIIEQLNRRYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=61931 GDK20_RS01850 WP_001557587.1 410597..411442(+) (spo0J) [Staphylococcus aureus strain KG-22]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGCAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGAATTTTGCAACCAATTGTGCTTAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTGCCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTTAGATATTTAGAAAACCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGA
GAACAGTATGGTACCAAAGTAGATATATCAATAAAAAAATCGGTTGGTAAAATCTCATTTGAGTTTGATTCACAAGATGA
CTTTGTGAGAATAATTGAACAATTAAATCGTAGGTATGGTAAATAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(22-109)

HTH domain found in ParB protein (HTH_ParB)

(161-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

40.996

92.883

0.381

Multiple sequence alignment