Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LJU29_RS04805 Genome accession   NZ_CP085684
Coordinates   1066427..1067794 (+) Length   455 a.a.
NCBI ID   WP_002555235.1    Uniprot ID   A0A108WX83
Organism   Pseudomonas ficuserectae strain ZJDX-003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1061427..1072794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJU29_RS04775 cydB 1061525..1062532 (+) 1008 WP_002555240.1 cytochrome d ubiquinol oxidase subunit II -
  LJU29_RS04780 - 1062554..1062721 (+) 168 WP_002555239.1 DUF2474 domain-containing protein -
  LJU29_RS04785 - 1062808..1063932 (-) 1125 WP_041924638.1 class I SAM-dependent methyltransferase -
  LJU29_RS04790 - 1064063..1064296 (-) 234 WP_004666252.1 helix-turn-helix transcriptional regulator -
  LJU29_RS04795 - 1064633..1065409 (+) 777 WP_004655524.1 ferredoxin--NADP reductase -
  LJU29_RS04800 mscL 1065786..1066232 (-) 447 WP_002555236.1 large-conductance mechanosensitive channel protein MscL -
  LJU29_RS04805 radA 1066427..1067794 (+) 1368 WP_002555235.1 DNA repair protein RadA Machinery gene
  LJU29_RS04810 - 1067809..1068183 (-) 375 WP_005754283.1 PilZ domain-containing protein -
  LJU29_RS04815 - 1068469..1070544 (+) 2076 WP_002555233.1 carbon starvation CstA family protein -
  LJU29_RS04820 - 1070572..1070769 (+) 198 WP_002555232.1 YbdD/YjiX family protein -
  LJU29_RS04825 yjiA 1070865..1071842 (+) 978 WP_005754278.1 GTPase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48913.48 Da        Isoelectric Point: 7.1316

>NTDB_id=619279 LJU29_RS04805 WP_002555235.1 1066427..1067794(+) (radA) [Pseudomonas ficuserectae strain ZJDX-003]
MAKAKRLYGCTECGATFPKWAGQCSECGAWNTLVETMIESGAAAPPTGRTGWTGSQAQIRTLAEVSVEEIPRFSTNSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQRMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIA
TAKVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHMS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=619279 LJU29_RS04805 WP_002555235.1 1066427..1067794(+) (radA) [Pseudomonas ficuserectae strain ZJDX-003]
ATGGCCAAGGCCAAACGCTTGTACGGCTGCACCGAGTGCGGCGCGACATTTCCCAAGTGGGCGGGCCAGTGCAGCGAATG
CGGCGCCTGGAACACACTGGTCGAAACGATGATTGAGAGTGGCGCTGCTGCGCCGCCCACCGGGCGTACCGGCTGGACCG
GTTCACAGGCGCAAATCAGAACCCTGGCAGAAGTCAGTGTCGAAGAGATTCCGCGCTTCTCCACCAACTCCACCGAGCTC
GACCGAGTGCTGGGCGGCGGGCTGGTTGACGGCTCGGTGGTGCTGATTGGCGGCGACCCCGGCATCGGCAAGTCGACAAT
TCTGTTGCAGACACTGTGCAATATCGCCCAGCGCATGCCCGCGCTGTATGTCACCGGCGAGGAATCCCAGCAGCAGGTGG
CCATGCGTGCCCGACGCCTGGGGCTGCCGCAGGACAAGCTGCGCGTCATGACTGAAACCTGTATCGAAACCATCATTGCC
ACTGCCAAGGTCGAGAAGCCCAAGGTCATGGTGATCGATTCGATCCAGACGATTTTCACCGAACAGTTGCAGTCAGCACC
GGGTGGCGTGTCGCAGGTTCGCGAAAGCGCGGCCTTGCTGGTGCGCTACGCCAAACAGAGCGGCACGGCGATCTTTCTGG
TTGGTCACGTCACTAAAGAGGGCGCGCTTGCCGGCCCGCGTGTGCTTGAGCACATGGTCGACACCGTATTGTATTTCGAG
GGCGAGTCGGATGGCCGTCTGCGTCTGCTGCGGGCGGTGAAGAATCGCTTCGGCGCGGTGAACGAACTGGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCGTCGGCGATTTTTCTCACCCGTGCTCAGGAAGAAGTGCCGGGCA
GTGTGGTCATGGCCACTTGGGAAGGCACGCGGCCGATGCTGGTGGAGGTTCAGGCGCTGGTGGACGACAGCCACATGTCC
AACCCGCGTCGTGTAACGCTGGGTCTGGACCAGAACCGTCTGGCCATGCTCCTGGCGGTCCTGCATCGACATGGCGGTAT
TCCGACTCACGATCAGGACGTGTTTCTCAACGTAGTGGGCGGTGTGAAAGTGCTGGAAACCGCATCCGACCTGGCCTTGA
TGGCTGCGGTGATGTCCAGCCTGCGCAATCGTCCGCTGCCGCATGACTTGCTGGTGTTTGGCGAAGTGGGGCTGTCGGGT
GAGGTCAGGCCGGTGCCCAGCGGCCAGGAGCGCCTCAAGGAAGCCGCCAAGCATGGCTTCAAGCGGGCCATCGTACCTAA
AGGCAATGCGCCGAAGGAAGCGCCACCCGGTTTGCAGATCATTGCCGTCACGCGTCTGGAGCAGGCACTGGATGCGTTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108WX83

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.123

100

0.492
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468