Detailed information NTG0619277

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LJU29_RS03625
• Genome accession: NZ_CP085684
• Coordinates: 804453..805790 (-)
• Length: 445 a.a.
• NCBI ID: WP_005758474.1
• Uniprot ID: -
• Organism: Pseudomonas ficuserectae strain ZJDX-003
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 799453..810790

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJU29_RS03615	-	802304..803413 (-)	1110	WP_257111657.1	efflux RND transporter periplasmic adaptor subunit	-
LJU29_RS03620	-	803495..804112 (-)	618	WP_002551994.1	TetR/AcrR family transcriptional regulator	-
LJU29_RS03625	pilR	804453..805790 (-)	1338	WP_005758474.1	sigma-54 dependent transcriptional regulator	Regulator
LJU29_RS03630	pilS	805793..807385 (-)	1593	WP_057423588.1	nitrogen regulation protein NR(II)	Regulator
LJU29_RS03635	-	807375..807614 (-)	240	WP_002551997.1	PP0621 family protein	-
LJU29_RS03640	-	807744..808766 (-)	1023	WP_005733851.1	outer membrane protein assembly factor BamD	-
LJU29_RS03645	rluD	808916..809878 (+)	963	WP_002551999.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
LJU29_RS03650	pgeF	809875..810603 (+)	729	WP_257111658.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49788.88 Da
• Isoelectric Point: 6.5777

>NTDB_id=619277 LJU29_RS03625 WP_005758474.1 804453..805790(-) (pilR) [Pseudomonas ficuserectae strain ZJDX-003]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRCARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPCAQPARSIDSRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGSQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LKRLAGNGTQPVARLNAQALDTLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESASPQEPNSPSLADIDNLED
YLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=619277 LJU29_RS03625 WP_005758474.1 804453..805790(-) (pilR) [Pseudomonas ficuserectae strain ZJDX-003]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGACGAGCCGGATATCCGCGAACTGCTGGAGATCACTCTGGGGCGCAT
GAAACTCGACACCCGATGCGCCCGCAATGTTGCCGAGGCCCACGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGA
CCGACATGCGTCTGCCCGACGGCAACGGCCTTGAGCTGGTGCAGCATATTCAGCACGGCTACCCCCATGTGCCAGTGGCG
ATGATCACTGCCCACGGCAACCTGGACACCGCGATTAATGCGCTCAAGGCCGGGGCTTTCGATTTTGTGACCAAGCCGGT
TGACCTCGGCAGGCTGCGCGAACTGGTCAATAGTGCGCTGAGCCTGCCTTGCGCCCAGCCAGCCCGCAGCATCGACAGCC
GCCTGCTGGGCGACTCGCTGGCGATGCGTACCTTGCGCAACCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAATCGGGCAGTGGCAAGGAGCTTGTAGCGCGGCTGATCCACGAGCAGGGTCCGCGCATCGACAAACCGTT
CATACCGGTGAATTGCGGGGCCATTCCTTCCGAGCTGATGGAGAGTGAATTCTTTGGCCATCGCAAGGGCAGTTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAGGCGGCACATACCGGGACGCTGTTTCTCGACGAGGTGGCCGACCTACCG
CTGGCCATGCAGGTAAAGCTGTTGCGAGCCATCCAGGAAAAATCAATCCGCAGTGTAGGCAGCCAGCAAGAGCAGATTGT
GGACGTACGCATTCTGTGCGCCACGCACAAAAATCTGAATGCAGAGGTTGCGGCAGGCCGTTTCCGTCAGGATCTGTATT
ACCGGTTGAACGTGATCGAAGTGCGCGTCCCCTCATTGCGCGAACGGCGCGAGGACATCGATCAACTGGCAGCCAGTGTT
CTAAAGCGACTTGCTGGCAATGGCACGCAACCGGTGGCGCGCCTGAATGCGCAGGCGCTCGACACGCTGAAGAGCTACCG
ATTCCCCGGCAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCCTACACGCTCTGTGAAAACGATGAAATCCATGCCA
GCGACCTGCGCCTGGCAGAGTCCGCCAGCCCCCAGGAGCCCAACAGCCCTAGCCTGGCCGACATCGACAACCTTGAAGAC
TATCTGGAAAGCATCGAGCGCAAGCTGATTCTGCAGGCACTGGAAGAAACCCGCTGGAACCGTACCGCAGCGGCAGAAAG
GCTCAGCTTGTCCTTCAGATCGCTGCGTTACCGGCTGAAGAAACTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	77.703	99.775	0.775
pilR	Acinetobacter baumannii strain A118	48.596	100	0.506
luxO	Vibrio cholerae strain A1552	37.162	99.775	0.371