Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LJR53_RS21195 Genome accession   NZ_CP085682
Coordinates   4857492..4858445 (-) Length   317 a.a.
NCBI ID   WP_019688644.1    Uniprot ID   A0A378Y424
Organism   Paenibacillus polymyxa strain YS18-2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4852492..4863445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJR53_RS21170 - 4852961..4853872 (-) 912 WP_025365861.1 aldo/keto reductase -
  LJR53_RS21175 - 4854031..4854774 (-) 744 WP_257126302.1 alpha/beta hydrolase -
  LJR53_RS21180 - 4854807..4855787 (-) 981 WP_257126303.1 siderophore ABC transporter substrate-binding protein -
  LJR53_RS21185 - 4855800..4856558 (-) 759 WP_025365864.1 ABC transporter ATP-binding protein -
  LJR53_RS21190 - 4856552..4857502 (-) 951 WP_126666631.1 iron chelate uptake ABC transporter family permease subunit -
  LJR53_RS21195 ceuB 4857492..4858445 (-) 954 WP_019688644.1 ABC transporter permease Machinery gene
  LJR53_RS21200 - 4858770..4859447 (+) 678 WP_257126304.1 response regulator transcription factor -
  LJR53_RS21205 - 4859448..4860365 (+) 918 WP_257126305.1 sensor histidine kinase KdpD -
  LJR53_RS21210 - 4860473..4861150 (+) 678 WP_017425557.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34704.67 Da        Isoelectric Point: 9.9012

>NTDB_id=619259 LJR53_RS21195 WP_019688644.1 4857492..4858445(-) (ceuB) [Paenibacillus polymyxa strain YS18-2]
MKLRYLILAFIVLAFASVFIGVHDVTPLDLFHLSNDQAQVLLISRFPRLVSIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLVFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=619259 LJR53_RS21195 WP_019688644.1 4857492..4858445(-) (ceuB) [Paenibacillus polymyxa strain YS18-2]
ATGAAATTGCGCTATTTAATACTGGCTTTTATCGTACTGGCCTTCGCCTCGGTGTTTATCGGTGTGCATGATGTAACTCC
ACTTGATTTGTTCCACTTATCCAACGATCAAGCGCAGGTGCTCCTGATTAGCAGATTCCCACGTTTGGTCAGCATCATTA
TCGCAGGGGCGAGTATGAGTATCTGCGGGCTCATCATGCAGCAGCTTACCCGGAATCGGTTTGTTTCGCCGACCACCGCA
GGCACGATGGATGCGGCACGATTAGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCAGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTCTAGGGGGAACCCTGGTTTTCATGAAGATACTGGATAAAATCCGTTTTAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTGACGACTTTTTTTGCTTACAAATACAATCTGATT
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATTATGAGTGGTCGCTACGAAATGCTGTATCTCAGTGTTCC
TTTGGTCGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCTAATTTGGGCG
TACATTACAAGCGCACCGTCAATGTGGGTTTGGTGATCGTGGCTTTGGTGTCCTCTGTTGTTATCTTAACCGTCGGGACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGTATGTACATGGGGGATAATCTGAAAAAAAGCCTAGCACATAC
AGCGATCTTGGGTGCCGTGTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTACCCATATGAAATTTCTGTAG
GGCTTACGGTTGGTGTAATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378Y424

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.159

99.369

0.498