Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NW961_RS04525 Genome accession   NZ_CP102955
Coordinates   945496..947304 (+) Length   602 a.a.
NCBI ID   WP_258413303.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 28-G-I     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 940496..952304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW961_RS04500 (NW961_04500) opp4C 940649..941530 (+) 882 WP_001180264.1 oligopeptide ABC transporter permease -
  NW961_RS04505 (NW961_04505) trpS 941572..942561 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  NW961_RS04510 (NW961_04510) spxA 942856..943251 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  NW961_RS04515 (NW961_04515) mecA 943622..944341 (+) 720 WP_001217728.1 adaptor protein MecA -
  NW961_RS04520 (NW961_04520) coiA 944462..945448 (+) 987 WP_258411056.1 competence protein CoiA family protein Machinery gene
  NW961_RS04525 (NW961_04525) pepF 945496..947304 (+) 1809 WP_258413303.1 oligoendopeptidase F Regulator
  NW961_RS04530 (NW961_04530) yjbH 947764..948570 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  NW961_RS04535 (NW961_04535) - 948593..948958 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  NW961_RS04540 (NW961_04540) - 949062..949655 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  NW961_RS04545 (NW961_04545) - 949841..950188 (+) 348 WP_001242102.1 hypothetical protein -
  NW961_RS04550 (NW961_04550) - 950205..950840 (+) 636 WP_001077683.1 GTP pyrophosphokinase family protein -
  NW961_RS04555 (NW961_04555) - 950857..951666 (+) 810 WP_001270834.1 NAD kinase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 69766.33 Da        Isoelectric Point: 4.8882

>NTDB_id=619255 NW961_RS04525 WP_258413303.1 945496..947304(+) (pepF) [Staphylococcus aureus strain 28-G-I]
MSQQLTREEQERKYPEYTWDLTTIFKDDEAFEAAFKEVESELGKEEQFKGHIGDSAETLYNALELEDTLGTKLEKVYVYA
HLKQDQDTTNDKYTGMESRAHQLIIKFSSAWSFLVPEILQIDEDKIESFVSSYDKLQKFAFDLKLINEKRPHILDAETEK
LLTEAQDALSTPSNVYGMFSNADLVFEDAIDKDGNAHPLTQGTFIKYLESDDRKLRESAFRNVYKAYGAHNNTLGATLAG
EVKKNVFNARTHNYKTAREKALSNNHIPENVYDNLVKTVHKYLPLLHRYTELRKELLGLDDLKMYDLYTPLIKDIKFEMP
YEEAKEWMLKALEPMGEEYLNVVKEGLNNRWVDVYENKGKRSGGYSSGAHLTNPFILLNWSNTISDLYTLVHEFGHSAHS
YFSRKFQPSNSSDYTIFVAEVASTCNEALLSDYMDKHLDDEKRLLLLNQELERFRATLFRQTMFAEFEHKIHAIEEAGEP
LTPTRMNEEYAKLNKLYFGDSVETDEDISKEWSRIPHFYMNYYVYQYATGYSAAQSLSHQILTEGKPAVDRYINEFLKKG
SSNYPIEILKNAGVDMTTPEPIEQACEVFEQKLNAFEKLMKA

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=619255 NW961_RS04525 WP_258413303.1 945496..947304(+) (pepF) [Staphylococcus aureus strain 28-G-I]
ATGAGTCAACAATTAACGAGAGAAGAACAGGAACGTAAATATCCTGAGTATACATGGGACCTAACTACAATCTTTAAAGA
TGACGAAGCATTTGAAGCTGCATTTAAAGAAGTTGAAAGTGAGTTAGGTAAAGAAGAACAATTTAAAGGACATATTGGTG
ATAGCGCTGAAACACTTTATAATGCATTGGAATTAGAAGATACATTAGGTACTAAATTAGAAAAAGTTTATGTGTACGCA
CATTTAAAACAAGACCAAGATACTACTAATGATAAATATACAGGTATGGAATCGAGAGCACACCAACTTATTATAAAATT
TAGTTCTGCATGGAGTTTCTTAGTACCAGAAATTTTACAAATTGATGAAGATAAAATTGAATCATTTGTAAGTTCATATG
ATAAATTACAAAAATTTGCATTTGATTTGAAATTAATAAACGAAAAACGTCCGCATATTTTAGATGCTGAAACTGAAAAA
TTACTAACAGAAGCACAAGACGCATTATCAACGCCATCAAATGTATACGGTATGTTTAGCAACGCTGATTTAGTATTTGA
AGATGCGATTGATAAAGATGGAAATGCACACCCGTTAACACAAGGTACATTTATTAAGTATTTAGAATCAGATGATCGCA
AACTAAGAGAAAGTGCTTTTAGAAATGTATATAAAGCATATGGTGCTCATAATAATACGCTTGGCGCTACGCTAGCAGGT
GAAGTGAAGAAAAATGTATTTAATGCTCGTACACACAATTACAAAACTGCAAGAGAAAAAGCATTGAGTAATAATCATAT
TCCAGAAAATGTATATGACAATCTAGTAAAAACTGTACATAAATATTTACCATTGCTACATAGATATACTGAATTGCGCA
AAGAATTGCTAGGTTTAGATGACTTGAAAATGTATGATTTATATACACCATTAATTAAAGATATTAAGTTTGAAATGCCT
TATGAAGAAGCTAAAGAGTGGATGTTAAAAGCATTAGAACCAATGGGTGAAGAATATTTAAATGTAGTTAAAGAAGGCTT
AAACAATCGTTGGGTCGATGTCTATGAGAATAAAGGTAAACGTTCAGGTGGCTATTCATCAGGTGCACATTTAACTAATC
CATTTATTCTACTTAACTGGTCTAATACTATTTCAGACTTATACACATTAGTTCATGAATTTGGGCATTCAGCACATAGT
TACTTCAGTAGAAAATTCCAACCGTCAAATTCTAGTGACTACACTATTTTTGTCGCTGAAGTTGCATCAACTTGTAACGA
AGCACTTTTAAGTGATTATATGGATAAACATCTTGATGATGAAAAACGCTTATTATTATTAAACCAAGAATTAGAACGTT
TCAGAGCTACATTATTCCGACAAACAATGTTCGCAGAATTTGAGCATAAAATTCATGCAATTGAAGAAGCAGGTGAACCA
TTAACGCCAACTAGAATGAATGAAGAATATGCCAAATTAAATAAATTATACTTCGGTGATTCTGTAGAAACTGATGAAGA
TATTAGTAAGGAATGGTCACGTATTCCACACTTCTATATGAATTATTATGTATATCAATACGCAACTGGATACAGTGCAG
CTCAAAGCTTAAGTCATCAAATTTTAACAGAAGGTAAGCCAGCAGTAGATAGATATATTAATGAATTCTTGAAAAAAGGT
AGCTCAAATTATCCAATTGAGATATTAAAAAATGCTGGTGTAGATATGACAACACCTGAACCAATTGAACAAGCTTGTGA
AGTTTTTGAACAAAAATTGAACGCTTTTGAAAAATTAATGAAAGCTTAG

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

43.952

97.508

0.429