Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LJR53_RS12130 Genome accession   NZ_CP085682
Coordinates   2754329..2756179 (+) Length   616 a.a.
NCBI ID   WP_117289772.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain YS18-2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2749329..2761179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJR53_RS12110 - 2749871..2751544 (+) 1674 WP_103042424.1 RICIN domain-containing protein -
  LJR53_RS12115 - 2751712..2751927 (+) 216 Protein_2356 nitronate monooxygenase -
  LJR53_RS12120 - 2752086..2752493 (+) 408 WP_017426910.1 MarR family winged helix-turn-helix transcriptional regulator -
  LJR53_RS12125 rcrP 2752573..2754342 (+) 1770 WP_017426911.1 ABC transporter ATP-binding protein Regulator
  LJR53_RS12130 rcrQ 2754329..2756179 (+) 1851 WP_117289772.1 ABC transporter ATP-binding protein Regulator
  LJR53_RS12135 - 2756387..2756869 (+) 483 WP_257127058.1 IclR family transcriptional regulator -
  LJR53_RS12140 - 2756912..2757154 (+) 243 Protein_2361 IclR family transcriptional regulator C-terminal domain-containing protein -
  LJR53_RS12145 - 2757339..2758028 (+) 690 WP_019687275.1 type 1 glutamine amidotransferase -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 68204.10 Da        Isoelectric Point: 6.7132

>NTDB_id=619249 LJR53_RS12130 WP_117289772.1 2754329..2756179(+) (rcrQ) [Paenibacillus polymyxa strain YS18-2]
MDKNEHTVGSQHIEMKQRGPIGRGPTEGMGTGKKANDFKKNIRQLLSYIKAYMPMIILSMVLALAGSVFNVIGPDKLSDI
ANLIQEGIVTGIDVNAVQKIVLVLVVLYGLGLIFNYFQGFITVTVSQRLTKKMRTELSRKINHMPLKYFDATSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTITGIVATLIGFSLMTVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEKAAKEVFHGINGRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCIVGALLVNQHVITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELVDESDKTMKLDNAKGDVEFKHVRFGYNEDHMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNGGEIYIDGTPISQLTRENVHKLFCMVLQDTWLFEGTIRENIVFSKEHVTD
EQVEAACRAVGLHSFLKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDAPMLILDEATSSVDTRTELLIQQAMDRLTV
GKTSFVIAHRLSTIKNADLILVMKDGNIIETGNHEELLGKNGFYADLYNSQFEHVS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=619249 LJR53_RS12130 WP_117289772.1 2754329..2756179(+) (rcrQ) [Paenibacillus polymyxa strain YS18-2]
ATGGACAAGAATGAACACACCGTCGGCAGTCAGCACATCGAAATGAAACAGCGAGGTCCCATAGGTAGAGGTCCTACGGA
AGGGATGGGAACTGGTAAAAAAGCGAATGATTTTAAAAAGAACATTCGCCAGCTCTTATCCTACATCAAGGCCTATATGC
CTATGATCATACTCTCAATGGTGCTGGCGCTGGCCGGTTCCGTCTTCAACGTGATTGGTCCAGATAAGCTCAGCGATATT
GCCAACCTGATCCAGGAAGGAATCGTAACAGGGATTGATGTGAATGCTGTTCAGAAGATTGTTCTTGTATTGGTAGTTTT
GTATGGTCTCGGCCTTATCTTTAATTATTTCCAAGGATTCATTACGGTAACCGTGTCACAGCGTCTTACAAAGAAGATGC
GGACAGAGCTGTCCCGAAAAATCAATCATATGCCTTTGAAGTATTTTGATGCTACGAGCTATGGTAATGTGCTTAGCCGT
GTGACCAATGATGTCGATACGATTGGACAAACGTTAAACAACAGTCTCGGCACGCTTGTCAGCGCACTGGCAACCTTTGT
GGGTGCATTGATTATGATGCTATATACGAACTGGATCATGACCATTACTGGGATTGTAGCTACGCTGATCGGTTTTTCAC
TGATGACCGTAATTATGAAGCATTCACAGAAATATTTTGTAGCACAGCAAGCAGAGCTTGGCCAGATCAACGGTCATATC
GAAGAAACCTATGCTGGGCATAACGTAGTCAAGGTATATAACGGAGAAAAAGCAGCCAAAGAAGTGTTTCATGGCATTAA
TGGCCGCTTGTATACAAATGCATGGAAATCCCAGTTCATGTCTGGCCTGATGATGCCGGTTATGATGTTCATCGGGAATT
TCGGTTATGTTGCGGTCTGTATCGTGGGCGCTTTGCTGGTGAACCAACATGTTATAACGATCGGAACTATCGTGGCCTTT
ATGGTGTATATTCGTCTGTTTACACAGCCTTTGTCACAGTTGGCGCAGGCTGCAACCAATTTGCAATCGGCGGCAGCTGC
TAGTGAACGTGTATTCGAATTTCTGGGTGAAGAAGAATTGGTGGATGAGAGCGACAAGACCATGAAGCTGGATAACGCCA
AAGGGGATGTCGAATTTAAGCATGTCCGTTTCGGTTATAATGAAGACCATATGATTATCAAAGATTTCTCTATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTTGGCCCTACAGGTGCCGGTAAGACGACGCTCGTGAATTTGCTCATGCGGTTCTA
TGAGCTGAACGGAGGGGAAATTTATATTGATGGAACTCCGATCAGCCAATTAACACGTGAGAATGTTCATAAATTATTCT
GCATGGTACTGCAGGATACATGGCTGTTTGAAGGAACGATTCGTGAGAATATCGTCTTTTCCAAAGAGCATGTTACCGAT
GAACAGGTAGAAGCCGCATGTAGAGCAGTGGGTCTGCATAGCTTCCTTAAAACTTTACCGCAGGGTTATGATACAGTGCT
AGACGACAAAGCTAATCTCTCTGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCCATGATTGAAGATGCGCCCATGC
TCATTCTGGACGAGGCCACAAGTTCGGTCGATACGCGTACGGAGTTACTGATTCAACAAGCGATGGACCGACTTACTGTT
GGGAAAACCTCCTTTGTGATTGCCCACCGTCTCTCAACGATTAAGAACGCCGATCTGATTCTGGTTATGAAGGACGGTAA
CATTATTGAAACGGGTAATCATGAGGAATTGCTAGGTAAAAACGGATTCTATGCCGATTTATACAACAGCCAGTTTGAAC
ATGTATCCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(56-331)

ABC transporter (ABC_tran)

(394-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.979

93.669

0.524