Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   LJR53_RS12125 Genome accession   NZ_CP085682
Coordinates   2752573..2754342 (+) Length   589 a.a.
NCBI ID   WP_017426911.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain YS18-2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2747573..2759342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJR53_RS12105 - 2748579..2749325 (-) 747 WP_103042658.1 LysR family transcriptional regulator -
  LJR53_RS25935 - 2749309..2749560 (+) 252 WP_371317301.1 epoxide hydrolase N-terminal domain-containing protein -
  LJR53_RS12110 - 2749871..2751544 (+) 1674 WP_103042424.1 RICIN domain-containing protein -
  LJR53_RS12115 - 2751712..2751927 (+) 216 Protein_2356 nitronate monooxygenase -
  LJR53_RS12120 - 2752086..2752493 (+) 408 WP_017426910.1 MarR family winged helix-turn-helix transcriptional regulator -
  LJR53_RS12125 rcrP 2752573..2754342 (+) 1770 WP_017426911.1 ABC transporter ATP-binding protein Regulator
  LJR53_RS12130 rcrQ 2754329..2756179 (+) 1851 WP_117289772.1 ABC transporter ATP-binding protein Regulator
  LJR53_RS12135 - 2756387..2756869 (+) 483 WP_257127058.1 IclR family transcriptional regulator -
  LJR53_RS12140 - 2756912..2757154 (+) 243 Protein_2361 IclR family transcriptional regulator C-terminal domain-containing protein -
  LJR53_RS12145 - 2757339..2758028 (+) 690 WP_019687275.1 type 1 glutamine amidotransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65126.45 Da        Isoelectric Point: 7.1082

>NTDB_id=619248 LJR53_RS12125 WP_017426911.1 2752573..2754342(+) (rcrP) [Paenibacillus polymyxa strain YS18-2]
MLKIFKYLKKNEWMFVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTAGTPMSDLLIPGIYMLLCAVGSMIASIIVGFFAA
KVAAGLAMRLRAMVFDKALSFSMEEMNSFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIAKIADKNWQWTAS
TGVAVAVLILMLSVIVIFALPSFQKIQRLTDNLNRVTREHLTGLRVVRAYNADQYQEEKFGQANTELMNTNLFANRLMTM
VGPGMTFIMSGLSVSIYWIGAYLINGTAVPDRISLFSNMVVFSSYAVQVVMAFMMVSMIFFLMPRASISAKRIMEVLNTE
SRIIDGHETAGEEGVMGQVEFRNVSFKYPDAEEPVLRNISFTAKQGETVAFIGATGSGKTSVINLISRFYDVTEGEVLVD
GVNVRNYKQQTLHNKIGYVPQRAVLFSGTVASNVSYGDNGRAEASEKLVKTAVEIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYVFDDSFSALDYRTDRILRSALKQETGHATTLIVAQRIGTIKDADRIIVLDHGEIVGNGT
HEELMANCSTYQEIAYSQLSKEELVHGQE

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=619248 LJR53_RS12125 WP_017426911.1 2752573..2754342(+) (rcrP) [Paenibacillus polymyxa strain YS18-2]
ATGCTGAAGATATTCAAATATCTCAAGAAAAATGAATGGATGTTCGTGCTCTGCAGCTTGGCCTTCATCGTTGTGCAGGT
GTGGCTGGATTTGAAGCTGCCTGATTATATGGCCGAAATTACAACCAAGCTGCAAACTGCAGGAACGCCGATGTCGGACC
TGCTGATTCCCGGTATTTATATGCTGTTATGTGCTGTCGGCAGTATGATTGCATCTATTATTGTCGGATTTTTTGCGGCA
AAGGTCGCGGCAGGGCTGGCCATGCGCCTGCGTGCGATGGTCTTTGACAAGGCCTTATCTTTTTCGATGGAAGAGATGAA
CAGCTTTTCAACAGCCAGCCTTATTACCCGCTCCACGAACGATGTTACCCAAATTCAAACGGTGGTTGCGCTGGGGTTGC
AGGTGATCATCAAGGCGCCGATTCTGGCCGTGTGGGCCATTGCAAAGATCGCAGATAAAAACTGGCAGTGGACCGCCTCT
ACAGGAGTGGCTGTGGCTGTCCTGATCCTGATGCTGAGTGTCATTGTTATTTTTGCTCTCCCCAGTTTCCAAAAAATCCA
ACGTCTCACTGATAATCTGAACAGGGTAACACGTGAGCATCTGACCGGGCTTCGAGTAGTGCGTGCTTATAATGCAGATC
AGTATCAGGAGGAGAAGTTTGGGCAGGCCAATACCGAATTGATGAATACAAACCTGTTTGCGAACCGGTTAATGACAATG
GTTGGTCCGGGCATGACCTTTATTATGTCGGGTCTGAGTGTCTCGATCTATTGGATTGGCGCTTACCTGATTAACGGAAC
GGCCGTGCCGGACCGCATTTCGCTATTCTCTAATATGGTCGTATTCTCATCTTATGCGGTGCAGGTGGTCATGGCCTTTA
TGATGGTAAGTATGATATTCTTCCTGATGCCTCGAGCTTCGATTTCTGCCAAACGGATTATGGAGGTATTGAATACCGAA
TCCCGCATCATTGACGGGCATGAAACAGCTGGAGAAGAGGGCGTTATGGGTCAGGTGGAATTCCGTAATGTCAGCTTTAA
ATATCCGGATGCGGAGGAGCCTGTGCTTCGCAACATTAGCTTTACGGCAAAACAAGGCGAGACGGTTGCCTTTATTGGCG
CAACAGGCAGCGGTAAAACCAGCGTAATCAATCTGATTTCTCGTTTCTACGATGTGACTGAGGGAGAGGTGCTCGTGGAT
GGCGTGAATGTCAGAAACTATAAGCAGCAGACACTCCATAACAAAATCGGGTATGTCCCACAGAGAGCCGTACTTTTCAG
CGGTACAGTGGCATCCAATGTTTCGTATGGCGATAACGGAAGAGCAGAAGCTTCGGAGAAACTCGTCAAAACAGCCGTGG
AGATTGCCCAAGGCACGGAGTTTGTCGAAAAAATGGACGGTCAGTATCAAGGACGGATTTCACAAGGTGGAGCGAACGTG
TCCGGTGGTCAAAAGCAGCGTCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAGATTTATGTCTTCGATGATTCCTT
CTCGGCATTGGACTACAGAACGGACCGGATTCTGCGCTCGGCGCTTAAACAAGAAACCGGCCATGCTACGACACTCATTG
TTGCTCAGCGCATAGGCACCATTAAGGACGCTGACCGGATTATCGTTCTGGACCACGGCGAGATTGTAGGGAACGGCACA
CACGAAGAGCTGATGGCGAATTGCAGCACCTATCAGGAGATCGCTTATTCGCAGCTTTCGAAGGAGGAACTCGTACATGG
ACAAGAATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.167

100

0.531