Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   NW961_RS02160 Genome accession   NZ_CP102955
Coordinates   468152..468880 (+) Length   242 a.a.
NCBI ID   WP_258415797.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 28-G-I     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 463152..473880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW961_RS02150 (NW961_02150) treP 464996..466423 (+) 1428 WP_000279374.1 PTS system trehalose-specific EIIBC component -
  NW961_RS02155 (NW961_02155) treC 466487..468127 (+) 1641 WP_258415796.1 alpha,alpha-phosphotrehalase -
  NW961_RS02160 (NW961_02160) treR 468152..468880 (+) 729 WP_258415797.1 trehalose operon repressor Regulator
  NW961_RS02170 (NW961_02170) - 469284..469385 (+) 102 WP_001790661.1 hypothetical protein -
  NW961_RS02175 (NW961_02175) - 469523..470047 (+) 525 WP_001167828.1 N-acetyltransferase -
  NW961_RS02180 (NW961_02180) dnaX 470116..471813 (+) 1698 WP_258415184.1 DNA polymerase III subunit gamma/tau -
  NW961_RS02185 (NW961_02185) - 471903..472220 (+) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  NW961_RS02190 (NW961_02190) recR 472227..472823 (+) 597 WP_000559156.1 recombination mediator RecR Machinery gene
  NW961_RS02195 (NW961_02195) - 473028..473126 (+) 99 WP_001791812.1 hypothetical protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27977.72 Da        Isoelectric Point: 4.9223

>NTDB_id=619233 NW961_RS02160 WP_258415797.1 468152..468880(+) (treR) [Staphylococcus aureus strain 28-G-I]
MAKQKKFMKIYEALKEDILNGQIQYGEQIPSEHDLVQLYQSSRETVRKALDLLALDGMIQKIHGKGSLVIYQEVTEFPFS
ELVSFKEMQEEMGVAYLTEVVVNEVVEAHEVPEVQHALNINSNESLIHIVRTRRLNQHVKIVDEDYFLKSIVSDIGNDVA
SDSIYDYLEKVLNLNISYSSKSITFEPFDEQAYQLFGDVSVAYSATVRSIVYLENTMPFQYNISKHLANEFKFNDFSRRR
TK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=619233 NW961_RS02160 WP_258415797.1 468152..468880(+) (treR) [Staphylococcus aureus strain 28-G-I]
ATGGCGAAACAAAAAAAGTTTATGAAGATTTATGAGGCGTTGAAAGAAGATATATTAAACGGGCAGATTCAATATGGTGA
ACAAATTCCGTCTGAACATGATTTGGTGCAATTGTACCAGTCATCTCGAGAGACCGTGCGTAAGGCATTAGATTTGTTGG
CATTAGACGGCATGATTCAAAAGATTCATGGTAAAGGGTCACTTGTCATTTATCAGGAGGTTACAGAGTTTCCATTTTCT
GAACTTGTTAGTTTTAAAGAAATGCAAGAAGAAATGGGCGTCGCATATTTAACTGAAGTTGTTGTGAATGAGGTTGTTGA
AGCGCATGAAGTTCCAGAAGTTCAACATGCTTTAAACATCAATTCTAATGAATCACTCATTCATATTGTTAGAACTCGTC
GGCTTAACCAACATGTGAAGATTGTTGATGAAGATTATTTTCTAAAGTCGATTGTTTCAGATATAGGTAATGATGTTGCG
AGTGATTCTATTTATGATTATTTGGAAAAGGTATTAAATCTTAATATTAGTTATTCAAGTAAGTCTATTACTTTTGAACC
GTTTGATGAACAAGCATATCAATTGTTTGGTGATGTATCGGTGGCTTATTCAGCAACAGTTCGAAGTATTGTGTATTTAG
AAAATACAATGCCGTTTCAATATAATATTTCAAAACATCTTGCAAATGAATTTAAATTTAATGACTTCTCAAGACGTCGT
ACAAAGTAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(92-232)

Bacterial regulatory proteins, gntR family (GntR)

(9-69)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

37.288

97.521

0.364