Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LJU33_RS13880 Genome accession   NZ_CP085637
Coordinates   2868970..2869599 (-) Length   209 a.a.
NCBI ID   WP_000839142.1    Uniprot ID   A0A8S7T410
Organism   Escherichia coli strain fECg99.1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2863970..2874599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJU33_RS13865 (LJU33_13865) helD 2864212..2866266 (-) 2055 WP_001349949.1 DNA helicase IV -
  LJU33_RS13870 (LJU33_13870) yccF 2866389..2866835 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LJU33_RS13875 (LJU33_13875) yccS 2866845..2869007 (+) 2163 WP_000875023.1 YccS family putative transporter -
  LJU33_RS13880 (LJU33_13880) sxy/tfoX 2868970..2869599 (-) 630 WP_000839142.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LJU33_RS13885 (LJU33_13885) sulA 2869818..2870327 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LJU33_RS13890 (LJU33_13890) ompA 2870684..2871724 (+) 1041 WP_000750416.1 porin OmpA -
  LJU33_RS13895 (LJU33_13895) matP 2871800..2872252 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LJU33_RS13900 (LJU33_13900) ycbZ 2872438..2874198 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24093.97 Da        Isoelectric Point: 8.8133

>NTDB_id=619031 LJU33_RS13880 WP_000839142.1 2868970..2869599(-) (sxy/tfoX) [Escherichia coli strain fECg99.1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVCLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=619031 LJU33_RS13880 WP_000839142.1 2868970..2869599(-) (sxy/tfoX) [Escherichia coli strain fECg99.1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGTGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995