Detailed information NTG0618980

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LJQ72_RS14365
• Genome accession: NZ_CP085633
• Coordinates: 3184855..3185700 (-)
• Length: 281 a.a.
• NCBI ID: WP_040038049.1
• Uniprot ID: -
• Organism: Pectobacterium brasiliense strain TS20HJ1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3179855..3190700

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJQ72_RS14340 (LJQ72_14340)	-	3180057..3180827 (-)	771	WP_227527034.1	ABC transporter ATP-binding protein	-
LJQ72_RS14345 (LJQ72_14345)	-	3180829..3181866 (-)	1038	WP_227527035.1	FecCD family ABC transporter permease	-
LJQ72_RS14350 (LJQ72_14350)	-	3181863..3182927 (-)	1065	WP_227527036.1	ABC transporter substrate-binding protein	-
LJQ72_RS14355 (LJQ72_14355)	-	3183237..3184262 (+)	1026	WP_014916091.1	LLM class flavin-dependent oxidoreductase	-
LJQ72_RS14360 (LJQ72_14360)	ypdK	3184620..3184694 (+)	75	WP_099606229.1	membrane protein YpdK	-
LJQ72_RS14365 (LJQ72_14365)	pilD	3184855..3185700 (-)	846	WP_040038049.1	prepilin peptidase	Machinery gene
LJQ72_RS14370 (LJQ72_14370)	-	3185809..3186555 (-)	747	WP_010681640.1	type II secretion system protein N	-
LJQ72_RS14375 (LJQ72_14375)	gspM	3186545..3187039 (-)	495	WP_040043679.1	type II secretion system protein GspM	-
LJQ72_RS14380 (LJQ72_14380)	gspL	3187036..3188313 (-)	1278	WP_227527037.1	type II secretion system protein GspL	-
LJQ72_RS14385 (LJQ72_14385)	gspK	3188310..3189296 (-)	987	WP_014916095.1	type II secretion system minor pseudopilin GspK	-
LJQ72_RS14390 (LJQ72_14390)	gspJ	3189293..3189943 (-)	651	WP_072010021.1	type II secretion system minor pseudopilin GspJ	-
LJQ72_RS14395 (LJQ72_14395)	gspI	3189943..3190308 (-)	366	WP_039273738.1	type II secretion system minor pseudopilin GspI	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31405.37 Da
• Isoelectric Point: 5.6762

>NTDB_id=618980 LJQ72_RS14365 WP_040038049.1 3184855..3185700(-) (pilD) [Pectobacterium brasiliense strain TS20HJ1]
MDDLREFAQLFPAWWFGSLGVLGLIVGSFLNVVIYRLPIMLEHRWRQDVELETGMVDSDPDTRYNLWWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQSVSVQYPLVEVITMLAFLTAGLLWLPGMALWGALILLSFLLVLTVIDIKTLLLPDVL
TLSLLWIGLLFNLSETFVPLIDAVVGAMAGYLSLWLLYWVFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLVWRGLRKEDTAKPLAFGPWLAMGGVFGVIMNGLNL

Nucleotide

• Length: 846 bp

>NTDB_id=618980 LJQ72_RS14365 WP_040038049.1 3184855..3185700(-) (pilD) [Pectobacterium brasiliense strain TS20HJ1]
GTGGACGATTTAAGGGAATTTGCACAGCTGTTTCCGGCGTGGTGGTTTGGATCGCTGGGCGTGTTGGGATTGATTGTTGG
CAGTTTTCTGAACGTGGTGATTTACCGCTTGCCGATTATGCTGGAGCATCGCTGGCGGCAGGATGTCGAGCTTGAAACGG
GCATGGTCGATTCCGATCCTGATACGCGCTACAACCTGTGGTGGCCGCCTTCGTCGTGCCCGCACTGCCAGCAGGCTATT
GCGGTAAAAGATAACATCCCGCTATTCAGCTGGCTGTGGTTGCGCGGCCGCTCCCGCTGCTGTCATCAATCAGTATCTGT
GCAATATCCGTTAGTGGAAGTCATCACCATGCTGGCTTTTCTGACGGCAGGTTTACTCTGGTTGCCCGGGATGGCGCTGT
GGGGGGCGTTGATTCTGCTGTCATTCCTGTTGGTGCTGACCGTTATTGATATAAAAACGCTGCTGCTGCCGGATGTGCTT
ACGCTGTCGCTTCTGTGGATAGGGCTGCTGTTTAATCTGTCGGAGACATTTGTCCCATTGATTGATGCCGTAGTCGGCGC
GATGGCCGGTTATTTATCTCTGTGGCTGCTTTATTGGGTATTCAAATACGCAACGGGAAAAGAGGCGCTGGGGTACGGTG
ATTTTAAGTTGCTGGCTGCGCTGGGTGCCTGGTTGGGCTGGCAGGCATTGCCGAATCTGGTTTTGGTGGCGGCGCTGAGC
GGGTTGGTCGTGACTCTCGTCTGGCGCGGATTGCGTAAAGAGGATACGGCTAAACCGCTGGCCTTTGGCCCCTGGCTGGC
AATGGGCGGGGTATTTGGCGTGATAATGAACGGATTGAATCTGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.815	96.441	0.48
pilD	Neisseria gonorrhoeae MS11	46.743	92.883	0.434
pilD	Vibrio campbellii strain DS40M4	44.981	95.73	0.431
pilD	Acinetobacter baumannii D1279779	41.392	97.153	0.402
pilD	Acinetobacter nosocomialis M2	41.026	97.153	0.399