Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LJQ72_RS02285 Genome accession   NZ_CP085633
Coordinates   495697..497079 (-) Length   460 a.a.
NCBI ID   WP_014914021.1    Uniprot ID   A0A3S0ZXC5
Organism   Pectobacterium brasiliense strain TS20HJ1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 490697..502079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJQ72_RS02255 (LJQ72_02255) pepP 490888..492213 (-) 1326 WP_227527637.1 Xaa-Pro aminopeptidase -
  LJQ72_RS02260 (LJQ72_02260) - 492271..492858 (-) 588 WP_014914018.1 YecA family protein -
  LJQ72_RS02265 (LJQ72_02265) zapA 493051..493380 (+) 330 WP_010284667.1 cell division protein ZapA -
  LJQ72_RS02275 (LJQ72_02275) - 493681..494328 (+) 648 WP_227527638.1 5-formyltetrahydrofolate cyclo-ligase -
  LJQ72_RS02280 (LJQ72_02280) nadR 494325..495578 (-) 1254 WP_039279404.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  LJQ72_RS02285 (LJQ72_02285) radA 495697..497079 (-) 1383 WP_014914021.1 DNA repair protein RadA Machinery gene
  LJQ72_RS02290 (LJQ72_02290) serB 497097..498074 (-) 978 WP_039282511.1 phosphoserine phosphatase -
  LJQ72_RS02295 (LJQ72_02295) - 498231..498929 (+) 699 WP_227527639.1 YtjB family periplasmic protein -
  LJQ72_RS02300 (LJQ72_02300) - 498978..499895 (-) 918 WP_104212593.1 hypothetical protein -
  LJQ72_RS02305 (LJQ72_02305) prfC 500187..501776 (+) 1590 WP_014914025.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49620.19 Da        Isoelectric Point: 7.4218

>NTDB_id=618973 LJQ72_RS02285 WP_014914021.1 495697..497079(-) (radA) [Pectobacterium brasiliense strain TS20HJ1]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASTSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKVPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=618973 LJQ72_RS02285 WP_014914021.1 495697..497079(-) (radA) [Pectobacterium brasiliense strain TS20HJ1]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGACTACCCGCGCTGGCAAGGGCAGTGCAGCGC
CTGCCATGCCTGGAACACCATTACCGAAGTCCGTCTGGCCTCGGCGTCAACATCACGTTCCGACCGTCTCACCGGTTATG
CGGGCGAAAGCGCTGGCGTCAGCCGGGTACAAAAGCTCTCGGAAATCAGTCTTGAAGCCCTGCCGCGCTTTTCCACCGGT
TTTCAGGAGTTTGACCGCGTTCTGGGCGGCGGCGTCGTCCCCGGCAGTGCGATTCTGATCGGCGGTAACCCCGGCGCGGG
TAAAAGTACCTTACTGCTGCAAACGCTCTGCAAACTGTCAGAGAACATGAAAACCCTGTACGTCACCGGTGAAGAGTCAC
TACAGCAGGTGGCGATGCGAGCGCATCGTCTCAACCTGCCGACCCAAAATCTCAATATGCTGTCGGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAAGTGATGCATCTCGCTGATAT
TCAATCGTCACCCGGTAGCGTGGCGCAGGTGCGTGAAACCGCCGCCTACCTGACGCGCTTCGCCAAAACGCGCGGCGTTG
CCATCGTGATGGTCGGCCACGTCACCAAAGACGGTTCGCTCGCCGGGCCGAAAGTGTTGGAACACTGCATCGACTGCTCC
GTGCTGCTGGATGGCGATGCCGATTCGCGCTTCCGCACCCTGCGCAGCCATAAAAACCGCTTCGGTGCCGTTAACGAGCT
GGGCGTGTTCGCGATGACGGAACAGGGTTTACGCGAGATCAGCAATCCGTCGGCAATTTTCCTCAGCCGCGGTGACGAAA
TCACGTCCGGCAGTTCAGTCATGGTGGTGTGGGAAGGTACGCGTCCGCTGCTGGTCGAAATTCAGGCGCTGGTGGATCAA
TCGATGATGGCTAACCCGCGTCGCGTGGCGGTCGGGCTGGAGCAAAATCGCCTGGCGATCCTGCTGGCGGTATTACATCG
CCACGGCGGCTTGCAGATGTCCGATCAGGATGTGTTCGTGAACGTTGTCGGCGGCGTTAAAGTCACCGAAACCAGCGCCG
ACCTGGCGCTGCTGCTCTCGCTGGTTTCCAGCTTCCGTGACCGCCCGTTGCCGCAGGATCTTGTCATCTTCGGTGAAGTC
GGTCTGGCGGGCGAAATCCGCCCTGTTCCGAGCGGCCAAGAGCGGATTACCGAAGCCGCCAAGCACGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGTCCCTGCCAGCATGCAGGTGTTCGGCGTGAAAAAGCTGGCCGATGCGC
TGGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S0ZXC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.483
  radA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  radA Streptococcus pneumoniae D39

42.982

99.13

0.426
  radA Streptococcus pneumoniae R6

42.982

99.13

0.426
  radA Streptococcus pneumoniae TIGR4

42.982

99.13

0.426
  radA Streptococcus mitis NCTC 12261

42.982

99.13

0.426
  radA Streptococcus mitis SK321

42.982

99.13

0.426