Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SIR_RS16935 Genome accession   NC_022246
Coordinates   1486613..1487344 (-) Length   243 a.a.
NCBI ID   WP_021003114.1    Uniprot ID   T1ZGB7
Organism   Streptococcus intermedius B196     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1481613..1492344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS16910 (SIR_1410) rimP 1482301..1482789 (-) 489 WP_006269953.1 ribosome maturation factor RimP -
  SIR_RS16915 (SIR_1411) - 1482997..1483689 (-) 693 WP_003073834.1 VIT family protein -
  SIR_RS16920 (SIR_1412) trmB 1484090..1484725 (-) 636 WP_003078354.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SIR_RS16925 (SIR_1413) ccrZ 1484722..1485519 (-) 798 WP_003073837.1 cell cycle regulator CcrZ -
  SIR_RS16930 (SIR_1414) - 1485570..1486616 (-) 1047 WP_021003113.1 ABC transporter permease -
  SIR_RS16935 (SIR_1415) pptA 1486613..1487344 (-) 732 WP_021003114.1 ABC transporter ATP-binding protein Regulator
  SIR_RS16940 (SIR_1416) - 1487413..1487823 (+) 411 WP_003073842.1 HIT family protein -
  SIR_RS16945 (SIR_1417) - 1487833..1488120 (+) 288 WP_003078430.1 hypothetical protein -
  SIR_RS16950 (SIR_1418) brpA 1488164..1489267 (-) 1104 WP_003073846.1 biofilm formation/cell division transcriptional regulator BrpA -
  SIR_RS16955 (SIR_1419) - 1489275..1489796 (-) 522 WP_003073848.1 GNAT family N-acetyltransferase -
  SIR_RS16960 (SIR_1420) tsaE 1489789..1490229 (-) 441 WP_009568047.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SIR_RS16965 (SIR_1421) - 1490567..1492006 (-) 1440 WP_021003115.1 NCS2 family permease -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27066.53 Da        Isoelectric Point: 4.5977

>NTDB_id=61897 SIR_RS16935 WP_021003114.1 1486613..1487344(-) (pptA) [Streptococcus intermedius B196]
MLEIKGLTGGYINIPVLKDISFTVENGELVGLIGLNGAGKSTTINEIIGLLTPYKGEILIDGAKLQDNPMGYRKKIGFIP
ETPSLYEELTLREHIETVAMAYDVDQEVAFARVEQLLTKFRLKEKLDWFPVHFSKGMKQKVMIICTFVVDPSLFIVDEPF
LGLDPVAIADLIELLKDEKTKGKSILMSTHVLDSAERMCDSFVILHKGEIRAKGNLSELQSEFSMPEASLNEIYLALTEE
ASL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=61897 SIR_RS16935 WP_021003114.1 1486613..1487344(-) (pptA) [Streptococcus intermedius B196]
ATGTTAGAAATAAAAGGGCTTACAGGCGGATATATAAATATCCCTGTTTTAAAAGATATCAGTTTCACGGTAGAAAATGG
TGAGCTGGTGGGCTTAATTGGTTTGAATGGTGCTGGAAAGTCTACAACAATCAATGAAATTATTGGACTTTTAACTCCTT
ATAAAGGGGAAATTTTAATTGACGGCGCTAAACTGCAAGATAATCCCATGGGTTATCGTAAGAAAATTGGATTTATTCCA
GAGACCCCTAGTTTATATGAGGAATTGACTTTAAGAGAGCACATTGAAACAGTTGCTATGGCTTATGATGTCGATCAAGA
GGTAGCTTTTGCGCGCGTGGAACAATTATTGACCAAGTTTCGCTTGAAAGAAAAATTGGATTGGTTCCCCGTTCACTTTT
CAAAGGGAATGAAGCAAAAAGTCATGATTATTTGCACCTTTGTAGTTGATCCGAGTCTCTTTATCGTGGATGAGCCATTT
TTGGGACTCGATCCAGTAGCGATTGCTGATTTGATAGAGCTTTTGAAAGATGAAAAGACGAAAGGCAAATCTATCCTGAT
GAGTACGCATGTGTTGGACTCAGCAGAAAGAATGTGTGATTCATTCGTGATTTTGCACAAGGGGGAAATCCGAGCGAAAG
GTAACTTATCAGAGTTGCAATCAGAATTTTCTATGCCAGAAGCTAGCCTGAATGAGATCTATCTGGCATTGACAGAAGAG
GCAAGTCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZGB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

70.711

98.354

0.695
  pptA Streptococcus salivarius strain HSISS4

70.293

98.354

0.691

Multiple sequence alignment