Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   NW967_RS00180 Genome accession   NZ_CP102952
Coordinates   44056..44469 (+) Length   137 a.a.
NCBI ID   WP_000998780.1    Uniprot ID   C1PH97
Organism   Staphylococcus aureus strain 39-B-49     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 39056..49469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW967_RS00160 (NW967_00160) - 40393..41004 (+) 612 WP_258411429.1 hypothetical protein -
  NW967_RS00165 (NW967_00165) - 41343..41717 (-) 375 Protein_30 carboxymuconolactone decarboxylase family protein -
  NW967_RS00170 (NW967_00170) istB 41779..42540 (-) 762 WP_001066123.1 IS21-like element helper ATPase IstB -
  NW967_RS00175 (NW967_00175) istA 42533..43825 (-) 1293 WP_258410076.1 IS21 family transposase -
  NW967_RS00180 (NW967_00180) lrpC 44056..44469 (+) 414 WP_000998780.1 Lrp/AsnC family transcriptional regulator Machinery gene
  NW967_RS00185 (NW967_00185) - 44531..45004 (+) 474 WP_258411430.1 GNAT family N-acetyltransferase -
  NW967_RS00190 (NW967_00190) - 45409..47055 (+) 1647 WP_040968626.1 IS1182 family transposase -
  NW967_RS00195 (NW967_00195) - 47091..47382 (-) 292 Protein_36 tRNA-dihydrouridine synthase -
  NW967_RS00200 (NW967_00200) - 47398..47499 (-) 102 WP_001791873.1 hypothetical protein -
  NW967_RS00205 (NW967_00205) - 47597..48352 (-) 756 WP_000355841.1 sulfite exporter TauE/SafE family protein -
  NW967_RS00210 (NW967_00210) cstR 48352..48612 (-) 261 WP_001105089.1 persulfide-sensing transcriptional repressor CstR -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15971.29 Da        Isoelectric Point: 4.6692

>NTDB_id=618963 NW967_RS00180 WP_000998780.1 44056..44469(+) (lrpC) [Staphylococcus aureus strain 39-B-49]
MNDLINEKIINVLLNNSRITINELSKQVNLSAPAVRERVNKLEDQGIIKGYTINIDYKELGYDVEILIELTIKNNRYKDF
KEFISKQDNVEFCYRVSGEACFVFKVRLENMDEVETFVDTIQPYGQTKCQFIFSSVV

Nucleotide


Download         Length: 414 bp        

>NTDB_id=618963 NW967_RS00180 WP_000998780.1 44056..44469(+) (lrpC) [Staphylococcus aureus strain 39-B-49]
ATGAATGACTTAATAAATGAAAAAATAATCAACGTTTTGTTAAATAATAGTAGAATTACTATTAATGAATTAAGTAAACA
AGTGAACTTATCTGCTCCAGCTGTAAGAGAAAGGGTAAATAAACTTGAAGATCAAGGTATTATAAAAGGTTATACAATTA
ACATAGATTATAAGGAATTAGGTTACGATGTAGAAATATTAATTGAGTTAACTATAAAGAATAATAGATACAAAGATTTT
AAAGAATTTATTTCAAAACAAGATAATGTTGAGTTTTGTTATCGTGTATCAGGAGAGGCATGTTTTGTATTTAAGGTTCG
GTTGGAAAATATGGATGAAGTGGAAACATTTGTTGACACCATACAGCCATATGGGCAGACAAAATGTCAGTTTATCTTTT
CATCAGTTGTGTAA

Domains

Predicted by InterProScan.

Winged helix-turn-helix DNA-binding (HTH_24)

(3-49)

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(68-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1PH97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

43.284

97.81

0.423