Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LJN53_RS14240 Genome accession   NZ_CP085622
Coordinates   2905306..2905935 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC71     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2900306..2910935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJN53_RS14225 (LJN53_14225) helD 2900548..2902602 (-) 2055 WP_217823202.1 DNA helicase IV -
  LJN53_RS14230 (LJN53_14230) yccF 2902725..2903171 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LJN53_RS14235 (LJN53_14235) yccS 2903181..2905343 (+) 2163 WP_000875044.1 YccS family putative transporter -
  LJN53_RS14240 (LJN53_14240) sxy/tfoX 2905306..2905935 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LJN53_RS14245 (LJN53_14245) sulA 2906154..2906663 (+) 510 WP_063100170.1 SOS-induced cell division inhibitor SulA -
  LJN53_RS14250 (LJN53_14250) ompA 2907020..2908072 (+) 1053 WP_000750419.1 porin OmpA -
  LJN53_RS14255 (LJN53_14255) matP 2908147..2908599 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  LJN53_RS14260 (LJN53_14260) ycbZ 2908785..2910545 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=618943 LJN53_RS14240 WP_000839153.1 2905306..2905935(-) (sxy/tfoX) [Escherichia coli strain EC71]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=618943 LJN53_RS14240 WP_000839153.1 2905306..2905935(-) (sxy/tfoX) [Escherichia coli strain EC71]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAGGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1