Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LJN50_RS15000 Genome accession   NZ_CP085619
Coordinates   3015058..3015687 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain EC32     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3010058..3020687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJN50_RS14985 (LJN50_14985) helD 3010300..3012354 (-) 2055 WP_001295938.1 DNA helicase IV -
  LJN50_RS14990 (LJN50_14990) yccF 3012477..3012923 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LJN50_RS14995 (LJN50_14995) yccS 3012933..3015095 (+) 2163 WP_000875041.1 YccS family putative transporter -
  LJN50_RS15000 (LJN50_15000) sxy/tfoX 3015058..3015687 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LJN50_RS15005 (LJN50_15005) sulA 3015906..3016415 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  LJN50_RS15010 (LJN50_15010) ompA 3016771..3017823 (+) 1053 WP_001346420.1 porin OmpA -
  LJN50_RS15015 (LJN50_15015) matP 3017899..3018351 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  LJN50_RS15020 (LJN50_15020) ycbZ 3018537..3020297 (+) 1761 WP_000156502.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=618920 LJN50_RS15000 WP_000839151.1 3015058..3015687(-) (sxy/tfoX) [Escherichia coli strain EC32]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=618920 LJN50_RS15000 WP_000839151.1 3015058..3015687(-) (sxy/tfoX) [Escherichia coli strain EC32]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995