Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | LJF99_RS18525 | Genome accession | NZ_CP085533 |
| Coordinates | 3912870..3913190 (-) | Length | 106 a.a. |
| NCBI ID | WP_005318073.1 | Uniprot ID | A4SJ96 |
| Organism | Aeromonas salmonicida subsp. salmonicida strain 890054 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3907870..3918190
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJF99_RS18505 (LJF99_18505) | - | 3908198..3908896 (-) | 699 | WP_005318084.1 | DnaT-like ssDNA-binding domain-containing protein | - |
| LJF99_RS18510 (LJF99_18510) | - | 3909250..3910221 (+) | 972 | WP_011898383.1 | response regulator | - |
| LJF99_RS18515 (LJF99_18515) | - | 3910253..3911650 (-) | 1398 | WP_011898384.1 | peptide MFS transporter | - |
| LJF99_RS18520 (LJF99_18520) | galU | 3911864..3912775 (-) | 912 | WP_005318075.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| LJF99_RS18525 (LJF99_18525) | comEA | 3912870..3913190 (-) | 321 | WP_005318073.1 | ComEA family DNA-binding protein | Machinery gene |
| LJF99_RS18530 (LJF99_18530) | cysQ | 3913358..3914128 (+) | 771 | WP_005318069.1 | 3'(2'),5'-bisphosphate nucleotidase CysQ | - |
| LJF99_RS18535 (LJF99_18535) | - | 3914210..3914506 (-) | 297 | WP_005318066.1 | YciI family protein | - |
| LJF99_RS18540 (LJF99_18540) | - | 3914533..3915084 (-) | 552 | WP_005318063.1 | septation protein A | - |
| LJF99_RS18545 (LJF99_18545) | - | 3915170..3916705 (-) | 1536 | WP_005318060.1 | pyridoxal-dependent decarboxylase | - |
| LJF99_RS18550 (LJF99_18550) | - | 3916930..3917565 (+) | 636 | WP_005318058.1 | hemolysin III family protein | - |
Sequence
Protein
Download Length: 106 a.a. Molecular weight: 11222.15 Da Isoelectric Point: 10.0215
>NTDB_id=618904 LJF99_RS18525 WP_005318073.1 3912870..3913190(-) (comEA) [Aeromonas salmonicida subsp. salmonicida strain 890054]
MNYKILTATLLLSCLPLLSQPLLAADKPAAKPATTVTTAKESGKVNLNTASINELTALKGIGEKKAQAIVDFRQKQGKFT
TVEQLADVSGIGPATLEANRDMIIVK
MNYKILTATLLLSCLPLLSQPLLAADKPAAKPATTVTTAKESGKVNLNTASINELTALKGIGEKKAQAIVDFRQKQGKFT
TVEQLADVSGIGPATLEANRDMIIVK
Nucleotide
Download Length: 321 bp
>NTDB_id=618904 LJF99_RS18525 WP_005318073.1 3912870..3913190(-) (comEA) [Aeromonas salmonicida subsp. salmonicida strain 890054]
ATGAACTACAAAATCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCCCTGCTCAGCCAGCCTTTGCTGGCCGCCGACAA
GCCGGCTGCCAAGCCAGCGACCACGGTCACCACCGCCAAGGAGAGTGGCAAGGTGAACCTGAATACGGCCAGTATCAATG
AGTTAACTGCCCTCAAGGGGATCGGAGAGAAGAAGGCGCAGGCCATCGTCGATTTTCGTCAGAAACAGGGCAAGTTCACC
ACGGTTGAACAACTGGCGGATGTCAGCGGCATAGGGCCGGCCACTCTGGAAGCAAATCGGGACATGATCATCGTCAAATA
G
ATGAACTACAAAATCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCCCTGCTCAGCCAGCCTTTGCTGGCCGCCGACAA
GCCGGCTGCCAAGCCAGCGACCACGGTCACCACCGCCAAGGAGAGTGGCAAGGTGAACCTGAATACGGCCAGTATCAATG
AGTTAACTGCCCTCAAGGGGATCGGAGAGAAGAAGGCGCAGGCCATCGTCGATTTTCGTCAGAAACAGGGCAAGTTCACC
ACGGTTGAACAACTGGCGGATGTCAGCGGCATAGGGCCGGCCACTCTGGAAGCAAATCGGGACATGATCATCGTCAAATA
G
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
50 |
100 |
0.519 |
| comEA | Vibrio cholerae strain A1552 |
50 |
100 |
0.519 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
46.392 |
91.509 |
0.425 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
42.453 |
100 |
0.425 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
61.905 |
59.434 |
0.368 |