Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SIR_RS16050 Genome accession   NC_022246
Coordinates   1294252..1294965 (+) Length   237 a.a.
NCBI ID   WP_021003017.1    Uniprot ID   T1ZFF7
Organism   Streptococcus intermedius B196     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1289252..1299965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS16040 (SIR_1238) treC 1290250..1291893 (-) 1644 WP_021003015.1 alpha,alpha-phosphotrehalase -
  SIR_RS16045 (SIR_1239) treP 1292061..1294073 (-) 2013 WP_021003016.1 PTS system trehalose-specific EIIBC component -
  SIR_RS16050 (SIR_1240) treR 1294252..1294965 (+) 714 WP_021003017.1 trehalose operon repressor Regulator
  SIR_RS16055 (SIR_1241) - 1295021..1296361 (-) 1341 WP_003078229.1 hemolysin family protein -
  SIR_RS16060 (SIR_1242) - 1296450..1298096 (-) 1647 WP_021003018.1 phosphoenolpyruvate carboxykinase (ATP) -
  SIR_RS16065 (SIR_1243) - 1298321..1299445 (-) 1125 WP_003073569.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27753.84 Da        Isoelectric Point: 8.9546

>NTDB_id=61888 SIR_RS16050 WP_021003017.1 1294252..1294965(+) (treR) [Streptococcus intermedius B196]
MKKYEQIFKLLKQDILNETYQIDDYLPSEHELVQTYKVSRDTVRKSLDLLQKAELIQKIRGQGSKVIKQAQIDFPVSNLT
SYQELVQQHGINSKTNLIQLEKITVDKKLSNLTGFPEYRLVWRIVRQRVVDEVASVLDIDYLDKTLVPSLTREIAEQSIY
AYLEEELGLRIAYAQKEITIDPATNRDQILMDIGTDQHVVSVKSKVYLADGQQFQFTDSRHKLEKFRFIDFAKRQKR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=61888 SIR_RS16050 WP_021003017.1 1294252..1294965(+) (treR) [Streptococcus intermedius B196]
ATGAAAAAATATGAACAAATTTTCAAACTCCTAAAACAGGATATTCTAAATGAAACATATCAGATCGATGATTATCTCCC
TAGTGAACACGAACTCGTACAAACTTACAAAGTCAGTCGTGACACCGTTCGTAAGTCACTTGACTTACTTCAAAAAGCAG
AGCTCATCCAAAAAATAAGAGGACAAGGTTCTAAAGTCATCAAACAAGCACAGATTGATTTTCCTGTCTCCAACCTGACT
AGCTACCAAGAACTCGTGCAGCAGCATGGAATAAATTCTAAAACTAATCTCATCCAATTAGAGAAAATTACAGTTGATAA
AAAATTATCTAATCTCACTGGTTTTCCTGAATATCGTCTGGTATGGCGAATTGTCCGCCAAAGAGTAGTCGATGAAGTCG
CTTCTGTTCTAGATATTGATTATCTTGATAAAACTCTTGTCCCTTCCTTAACTAGAGAAATAGCAGAACAGTCGATTTAT
GCTTATTTAGAAGAAGAATTAGGACTGCGCATTGCCTATGCCCAAAAAGAAATTACGATTGATCCAGCTACAAACCGTGA
CCAAATCTTGATGGATATCGGAACTGACCAGCATGTCGTTTCTGTCAAGTCCAAAGTTTACCTTGCAGATGGACAACAAT
TTCAATTTACAGATAGTCGCCATAAACTCGAAAAATTCCGTTTTATTGACTTTGCTAAGCGACAAAAACGCTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(90-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZFF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

63.983

99.578

0.637

Multiple sequence alignment