Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LCH97_RS17015 Genome accession   NZ_CP085530
Coordinates   3557199..3558602 (-) Length   467 a.a.
NCBI ID   WP_227302681.1    Uniprot ID   -
Organism   Vogesella sp. XCS3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3552199..3563602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH97_RS16975 (LCH97_16975) - 3552749..3553363 (-) 615 WP_227302674.1 flavin prenyltransferase UbiX -
  LCH97_RS16980 (LCH97_16980) - 3553333..3553884 (-) 552 WP_227302675.1 Gx transporter family protein -
  LCH97_RS16985 (LCH97_16985) - 3553865..3554236 (-) 372 WP_227302676.1 NusG domain II-containing protein -
  LCH97_RS16990 (LCH97_16990) rapZ 3554239..3555090 (-) 852 WP_227302677.1 RNase adapter RapZ -
  LCH97_RS16995 (LCH97_16995) hprK 3555071..3556027 (-) 957 WP_227302678.1 HPr(Ser) kinase/phosphatase -
  LCH97_RS17000 (LCH97_17000) ptsN 3556020..3556478 (-) 459 WP_017510097.1 PTS IIA-like nitrogen regulatory protein PtsN -
  LCH97_RS17005 (LCH97_17005) - 3556589..3556789 (-) 201 WP_227302679.1 hypothetical protein -
  LCH97_RS17010 (LCH97_17010) hpf 3556819..3557139 (-) 321 WP_227302680.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  LCH97_RS17015 (LCH97_17015) rpoN/rpoN1 3557199..3558602 (-) 1404 WP_227302681.1 RNA polymerase factor sigma-54 Machinery gene
  LCH97_RS17020 (LCH97_17020) lptB 3558608..3559336 (-) 729 WP_227302682.1 LPS export ABC transporter ATP-binding protein -
  LCH97_RS17025 (LCH97_17025) lptA 3559333..3559833 (-) 501 WP_227302683.1 lipopolysaccharide transport periplasmic protein LptA -
  LCH97_RS17030 (LCH97_17030) lptC 3559823..3560386 (-) 564 WP_227302684.1 LPS export ABC transporter periplasmic protein LptC -
  LCH97_RS17035 (LCH97_17035) kdsC 3560383..3560907 (-) 525 WP_147683046.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  LCH97_RS17040 (LCH97_17040) - 3560916..3561890 (-) 975 WP_370630738.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 51862.78 Da        Isoelectric Point: 4.7337

>NTDB_id=618875 LCH97_RS17015 WP_227302681.1 3557199..3558602(-) (rpoN/rpoN1) [Vogesella sp. XCS3]
MKQTLQLKVSQQLTLTPQLQQSIKLLQMSTLDLSSELERYLLENPLLERSDGSDSPPAEGDAPAPQESSNDTAEDRQQDS
MELTDWGSGSSGGSRDGDDEFDPILNAPCRPTLREHLTAQMRETQLGQRDSALLALLIDELDDDGYLQTPLEDVAAELPL
ELDVEAEELETLRKLMMQFEPMGIGSRDLGEFLALQLGNLPPHTPSLPLARLLAGEHLALLGSRDYTRLKKILGVGEAEL
RAAHSLIATLRPRPTSGFDQGETHYVAPDIHVVRRGGRWVAQLNRGSLPKLQVNQLYANMLQQRDSSHNLSGQLQEARWL
VKNIQQRFDTILKVSESIVERQQAFFELGEVAMRPLILRDIADELGLHESTISRVTTQKYLLCSRGLFELKYFFGNALET
DSGGECSATAIKALIRQIIDSEDGKKPLSDSAIADKLTAQGIQVARRTVAKYREAMQIPPVSLRKAL

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=618875 LCH97_RS17015 WP_227302681.1 3557199..3558602(-) (rpoN/rpoN1) [Vogesella sp. XCS3]
ATGAAACAAACCCTCCAGCTCAAAGTCAGCCAGCAACTCACCCTGACACCGCAACTGCAGCAGTCCATCAAGCTACTGCA
AATGTCCACGCTAGACCTGTCCAGCGAACTGGAGCGCTATCTGCTGGAAAACCCGCTGCTGGAGCGCAGCGACGGTAGCG
ACAGCCCGCCAGCAGAAGGCGATGCCCCCGCGCCCCAGGAAAGCAGCAACGACACCGCAGAAGATCGCCAACAAGACAGT
ATGGAGCTCACCGACTGGGGCAGCGGCAGCAGCGGTGGCAGCCGCGATGGGGACGACGAATTCGACCCTATCCTCAACGC
CCCATGCCGCCCCACCCTGCGCGAGCACCTCACGGCACAGATGCGCGAAACCCAGCTGGGGCAACGGGATAGCGCGCTGC
TGGCATTGCTGATTGACGAGCTGGACGACGACGGCTATCTGCAAACTCCGCTGGAAGACGTTGCCGCTGAACTACCGCTG
GAGCTGGATGTCGAAGCAGAAGAACTGGAAACCCTGCGCAAGCTCATGATGCAATTTGAACCCATGGGCATAGGCAGCCG
TGACCTGGGGGAATTTCTGGCACTGCAGCTGGGCAACCTGCCACCGCACACGCCGTCACTCCCGCTGGCGCGTCTGCTGG
CCGGCGAGCACTTGGCGTTGCTGGGTAGCCGAGACTACACCAGGCTGAAGAAAATCCTGGGCGTGGGCGAGGCCGAATTA
CGCGCTGCGCATAGTCTTATTGCCACGCTGAGACCACGGCCAACCAGTGGTTTTGACCAGGGCGAGACACATTATGTCGC
GCCGGATATCCATGTAGTGCGCCGTGGTGGCCGCTGGGTAGCCCAGCTGAATCGGGGCTCGCTGCCAAAACTTCAAGTAA
ATCAGCTGTATGCAAACATGCTGCAGCAGCGCGACAGTAGCCATAATCTTTCGGGCCAGTTACAAGAGGCCAGATGGCTG
GTAAAAAACATTCAGCAACGGTTTGACACCATCCTGAAAGTGTCGGAATCTATAGTTGAGAGGCAGCAAGCGTTCTTTGA
ACTCGGTGAAGTGGCCATGCGCCCGTTGATCCTGCGAGACATTGCAGATGAGCTGGGTTTGCATGAATCCACCATTTCCA
GGGTAACCACCCAGAAGTATCTGCTGTGCAGCCGCGGGCTGTTCGAGCTGAAATACTTTTTTGGTAATGCACTGGAAACG
GATAGTGGCGGCGAATGCTCTGCCACCGCCATCAAGGCGCTGATACGCCAGATTATCGACAGCGAGGACGGCAAGAAACC
GCTCTCCGACAGCGCCATCGCCGACAAGCTCACGGCACAAGGTATTCAGGTTGCCAGACGTACGGTTGCCAAGTATCGTG
AAGCTATGCAGATTCCGCCAGTTAGCCTTCGCAAGGCCTTATAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(310-465)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(110-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

48.902

100

0.525