Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LCH97_RS01560 Genome accession   NZ_CP085530
Coordinates   315257..316627 (+) Length   456 a.a.
NCBI ID   WP_227303051.1    Uniprot ID   -
Organism   Vogesella sp. XCS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 310257..321627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH97_RS01535 (LCH97_01535) hpnC 310822..311658 (+) 837 WP_227303047.1 squalene synthase HpnC -
  LCH97_RS01540 (LCH97_01540) hpnD 311655..312500 (+) 846 WP_017507910.1 presqualene diphosphate synthase HpnD -
  LCH97_RS01545 (LCH97_01545) hpnE 312497..313789 (+) 1293 WP_227303048.1 hydroxysqualene dehydroxylase HpnE -
  LCH97_RS01550 (LCH97_01550) - 313773..314525 (+) 753 WP_227303049.1 SDR family oxidoreductase -
  LCH97_RS01555 (LCH97_01555) - 314535..315206 (+) 672 WP_227303050.1 hypothetical protein -
  LCH97_RS01560 (LCH97_01560) radA 315257..316627 (+) 1371 WP_227303051.1 DNA repair protein RadA Machinery gene
  LCH97_RS01565 (LCH97_01565) - 316636..317196 (+) 561 WP_227303052.1 sigma-70 family RNA polymerase sigma factor -
  LCH97_RS01570 (LCH97_01570) - 317202..317372 (+) 171 WP_227303053.1 zf-HC2 domain-containing protein -
  LCH97_RS01575 (LCH97_01575) - 317507..317869 (-) 363 WP_227303054.1 DUF2325 domain-containing protein -
  LCH97_RS01580 (LCH97_01580) - 318129..320189 (+) 2061 WP_227303055.1 TonB-dependent siderophore receptor -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48813.13 Da        Isoelectric Point: 6.9921

>NTDB_id=618851 LCH97_RS01560 WP_227303051.1 315257..316627(+) (radA) [Vogesella sp. XCS3]
MAKLKTQYQCGECGGTSPKWQGQCPHCGAWNSLAETVATPPAAAANARFQSWTAQTQPVQQLSQVQAAEVPRESCGIEEL
DRVLGGGIVKGAVILLGGDPGIGKSTLLLQALATIGANRKVLYVSGEESPQQIALRASRLAVDASRVRLLSEIRLEAIIP
ALQAEMPEVAVIDSIQTLYSDQVTSAPGSVSQVRECAAQLTRIAKQSGITIILVGHVTKEGSLAGPRVLEHIVDTVLYFE
GDSHSSYRMIRAIKNRFGAANELGVFAMTDRGLRGVSNPSAIFLSSYRDDVSGSCVLVTQEGSRPLLVEIQALVDDAHGF
QPKRLSVGLEQNRLAMLMAVLNRHASIACFDQDVFLNAVGGVKINEPAADLAVILAMVSSLRNKPLPEKLVVFGEVGLSG
EVRPVARGQERLKEAAKLGFERAIVPAANKPRQDIEGLEVIAVERLSEAVDFCIRR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=618851 LCH97_RS01560 WP_227303051.1 315257..316627(+) (radA) [Vogesella sp. XCS3]
ATGGCAAAACTCAAAACGCAATATCAATGCGGCGAGTGCGGTGGCACCTCGCCCAAATGGCAAGGCCAGTGTCCGCACTG
CGGCGCCTGGAACAGCCTGGCCGAAACCGTGGCCACCCCGCCTGCTGCTGCGGCCAACGCGCGCTTCCAGAGCTGGACTG
CGCAAACGCAGCCGGTACAGCAGCTGTCGCAAGTACAGGCCGCCGAAGTGCCGCGCGAATCGTGCGGTATCGAAGAGCTG
GACCGTGTACTGGGCGGCGGCATCGTGAAAGGTGCTGTCATCCTGCTGGGCGGCGACCCCGGCATTGGCAAATCCACATT
GCTGCTGCAGGCGCTGGCGACCATCGGTGCCAACCGCAAGGTGCTGTACGTATCCGGCGAGGAATCGCCGCAGCAGATTG
CCCTGCGTGCCAGCCGCCTGGCGGTGGATGCCAGCCGCGTGCGGCTGCTGTCCGAAATCCGCCTGGAAGCCATCATCCCC
GCACTGCAGGCCGAAATGCCCGAAGTGGCGGTGATCGACTCCATCCAGACGCTGTATTCCGACCAGGTGACGTCGGCCCC
CGGCTCGGTATCGCAGGTACGCGAGTGCGCGGCGCAGCTGACGCGTATCGCCAAGCAAAGCGGCATTACCATTATTCTGG
TGGGCCACGTCACCAAGGAAGGCTCGCTGGCCGGCCCGCGCGTGCTGGAGCACATCGTGGATACCGTGCTGTATTTCGAG
GGCGATAGCCACTCCAGCTACCGCATGATCCGCGCCATCAAGAACCGCTTTGGCGCGGCCAACGAGCTGGGCGTGTTCGC
CATGACCGACCGCGGCCTGCGTGGCGTGTCCAACCCGTCGGCCATTTTCTTGTCCAGCTACCGCGACGACGTGTCCGGCT
CCTGCGTGCTAGTGACGCAAGAGGGCAGCCGCCCGCTGCTGGTGGAAATCCAGGCGCTGGTGGACGACGCGCACGGCTTC
CAGCCCAAGCGCCTGAGCGTGGGCCTGGAGCAAAACCGCCTGGCCATGCTGATGGCGGTGCTGAACCGCCACGCCAGCAT
TGCCTGCTTCGACCAGGACGTGTTCCTGAACGCGGTGGGCGGGGTGAAGATCAACGAACCGGCCGCCGACCTGGCGGTGA
TTCTGGCCATGGTATCGTCGCTGCGGAACAAGCCGCTGCCCGAGAAACTGGTGGTGTTTGGCGAGGTGGGGTTGTCTGGC
GAGGTGCGCCCGGTGGCGCGCGGCCAGGAGCGCCTGAAAGAGGCCGCCAAGCTGGGCTTCGAGCGCGCCATCGTGCCGGC
GGCCAACAAGCCGCGCCAGGACATAGAAGGCCTGGAAGTCATCGCGGTCGAGCGCCTGTCCGAGGCGGTCGATTTTTGCA
TTCGTCGCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(74-221)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(360-447)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.781

100

0.498
  radA Streptococcus mitis NCTC 12261

46.476

99.561

0.463
  radA Streptococcus pneumoniae Rx1

48.592

93.421

0.454
  radA Streptococcus pneumoniae D39

48.592

93.421

0.454
  radA Streptococcus pneumoniae R6

48.592

93.421

0.454
  radA Streptococcus pneumoniae TIGR4

48.592

93.421

0.454
  radA Streptococcus mitis SK321

48.592

93.421

0.454