Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NW341_RS09365 Genome accession   NZ_CP102946
Coordinates   1995955..1996284 (+) Length   109 a.a.
NCBI ID   WP_023109812.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SCAID WND1-2022 (148)     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1990955..2001284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW341_RS09350 (NW341_09350) - 1991570..1992532 (+) 963 WP_033877369.1 SDR family oxidoreductase -
  NW341_RS09355 (NW341_09355) - 1992532..1993569 (+) 1038 WP_003452706.1 glycosyltransferase family 4 protein -
  NW341_RS09360 (NW341_09360) - 1993767..1995764 (+) 1998 WP_003122257.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  NW341_RS09365 (NW341_09365) comEA/comE1 1995955..1996284 (+) 330 WP_023109812.1 ComEA family DNA-binding protein Machinery gene
  NW341_RS09375 (NW341_09375) - 1996501..1997697 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  NW341_RS09380 (NW341_09380) uvrB 1997885..1999897 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=618794 NW341_RS09365 WP_023109812.1 1995955..1996284(+) (comEA/comE1) [Pseudomonas aeruginosa strain SCAID WND1-2022 (148)]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=618794 NW341_RS09365 WP_023109812.1 1995955..1996284(+) (comEA/comE1) [Pseudomonas aeruginosa strain SCAID WND1-2022 (148)]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385