Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LIT31_RS23910 Genome accession   NZ_CP085514
Coordinates   4951009..4951959 (-) Length   316 a.a.
NCBI ID   WP_053536781.1    Uniprot ID   A0A9X1IUS9
Organism   Peribacillus frigoritolerans strain KF19     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4946009..4956959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT31_RS23895 (LIT31_23985) - 4948158..4949105 (-) 948 WP_286676195.1 siderophore ABC transporter substrate-binding protein -
  LIT31_RS23900 (LIT31_23990) - 4949317..4950075 (-) 759 WP_252278992.1 ABC transporter ATP-binding protein -
  LIT31_RS23905 (LIT31_23995) - 4950069..4951016 (-) 948 WP_252278994.1 iron chelate uptake ABC transporter family permease subunit -
  LIT31_RS23910 (LIT31_24000) ceuB 4951009..4951959 (-) 951 WP_053536781.1 ABC transporter permease Machinery gene
  LIT31_RS23915 (LIT31_24005) - 4952225..4952566 (+) 342 WP_252278996.1 DUF1450 domain-containing protein -
  LIT31_RS23920 (LIT31_24010) shc 4954154..4956049 (+) 1896 WP_252278998.1 squalene--hopene cyclase -
  LIT31_RS23925 (LIT31_24015) - 4956276..4956758 (-) 483 WP_252279000.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34941.26 Da        Isoelectric Point: 9.6490

>NTDB_id=618791 LIT31_RS23910 WP_053536781.1 4951009..4951959(-) (ceuB) [Peribacillus frigoritolerans strain KF19]
MKIRYLVMALIVLSFTSLFIGVKDITPLDLLNLSDDKVQIMLQSRFPRMVTIVIAGIVMSISGLIMQQLSRNKFVSPTTA
GTMDSARLGLLLAIIIFPSAALIEKMAFAFIFALAGTFLFMKILDQVKYKDTIFIPLVGLMFGNIVGSISTFFAYKYDLI
QSLNTWMNGDFSMIMSGRYELIYLSIPLVILAYFFANKFTVAGMGEEFAINLGLNYKFIVNFGLIIVALSSTVVLLTVGT
IPFIGLIVPNIVSLYLGDNLKKSLSHTALLGAVFLLICDILGRILIYPFEIPIGLVVGVIGSAVFIYLILRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=618791 LIT31_RS23910 WP_053536781.1 4951009..4951959(-) (ceuB) [Peribacillus frigoritolerans strain KF19]
ATGAAGATAAGATATTTAGTCATGGCGTTAATTGTTCTATCATTTACGTCATTATTCATTGGTGTAAAAGATATTACCCC
CCTGGATTTATTGAATCTAAGTGATGATAAAGTGCAAATCATGCTGCAAAGCCGTTTCCCTAGAATGGTGACCATAGTCA
TTGCCGGTATTGTGATGAGTATAAGCGGTCTGATCATGCAGCAATTGAGCCGCAATAAATTTGTATCCCCGACGACTGCC
GGTACCATGGACTCTGCAAGGCTGGGACTTCTTCTTGCCATTATCATTTTTCCATCGGCAGCACTTATTGAGAAAATGGC
ATTCGCTTTCATATTCGCTTTGGCAGGTACATTCTTGTTCATGAAAATTCTTGATCAAGTGAAATATAAGGATACGATCT
TCATTCCATTGGTTGGATTGATGTTTGGTAATATCGTAGGATCGATCTCGACTTTCTTTGCCTATAAATATGATTTGATT
CAAAGCCTCAACACATGGATGAATGGTGATTTCTCGATGATCATGTCGGGAAGGTACGAACTTATATATCTAAGTATCCC
GCTAGTCATTCTCGCATACTTCTTTGCCAATAAATTCACTGTGGCAGGGATGGGTGAGGAGTTTGCTATCAATCTAGGAC
TCAATTATAAGTTTATAGTCAATTTTGGATTGATCATCGTGGCATTGTCCTCCACTGTCGTTTTGTTAACGGTGGGAACG
ATTCCTTTCATAGGATTAATCGTACCAAATATTGTATCGCTTTACCTTGGTGACAATTTGAAAAAGAGTCTTTCTCATAC
AGCATTGCTAGGGGCAGTCTTCCTATTGATCTGCGATATTCTGGGCAGGATCCTCATATATCCATTTGAAATCCCGATCG
GACTCGTGGTTGGTGTGATAGGAAGCGCCGTATTTATCTATCTGATACTGAGGAGAAAGGCATATGAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.316

100

0.503