Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LIT31_RS16050 Genome accession   NZ_CP085514
Coordinates   3386658..3388373 (-) Length   571 a.a.
NCBI ID   WP_048681817.1    Uniprot ID   A0AAW9N8U9
Organism   Peribacillus frigoritolerans strain KF19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3381658..3393373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT31_RS16030 (LIT31_16095) - 3382657..3382893 (+) 237 WP_202313210.1 DUF2627 domain-containing protein -
  LIT31_RS16035 (LIT31_16100) - 3382932..3383666 (-) 735 WP_252277941.1 glycerophosphodiester phosphodiesterase -
  LIT31_RS16040 (LIT31_16105) spo0A 3384083..3384874 (-) 792 WP_034308269.1 sporulation transcription factor Spo0A -
  LIT31_RS16045 (LIT31_16110) spoIVB 3385204..3386496 (-) 1293 WP_252277942.1 SpoIVB peptidase -
  LIT31_RS16050 (LIT31_16115) recN 3386658..3388373 (-) 1716 WP_048681817.1 DNA repair protein RecN Machinery gene
  LIT31_RS16055 (LIT31_16120) argR 3388396..3388845 (-) 450 WP_034308279.1 transcriptional regulator ArgR -
  LIT31_RS16060 (LIT31_16125) - 3389165..3389995 (-) 831 WP_252277943.1 TlyA family RNA methyltransferase -
  LIT31_RS16065 (LIT31_16130) dxs 3390000..3391892 (-) 1893 WP_252277944.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LIT31_RS16070 (LIT31_16135) - 3392142..3393035 (-) 894 WP_252277945.1 polyprenyl synthetase family protein -
  LIT31_RS16075 (LIT31_16140) - 3393037..3393270 (-) 234 WP_034308286.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64511.41 Da        Isoelectric Point: 5.2858

>NTDB_id=618773 LIT31_RS16050 WP_048681817.1 3386658..3388373(-) (recN) [Peribacillus frigoritolerans strain KF19]
MLTELSIRNFAIIDSLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIEDEKHPVFAK
AEEFGLDMNDGMAILRRDISQSGKSVCRVNGKLVTISTLREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKIASAL
TEYQKLYKRYETASKQLNGLSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKHSSETVSNSYFLLEEAVSNIRDQLDSLDYDTERVEFIESRLNEINQLKRKYGRT
IEEILEYGAAIEEEVEKLQNRETHIAKLEKEMKSIKADLIVEAKNLSELRQKFAQQLTKKIHQELKDLYMEKTIFEPHFL
QTAYTFDELSDRGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTNTSVKPLIETEKIKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=618773 LIT31_RS16050 WP_048681817.1 3386658..3388373(-) (recN) [Peribacillus frigoritolerans strain KF19]
TTGTTAACAGAACTATCGATTAGGAATTTTGCGATAATAGACAGCCTGTCCGTTTCATTTGAGAAAGGCTTGACGGTCTT
GACAGGAGAAACGGGGGCAGGGAAGTCAATCATAATAGATGCCGTTCATCTCTTGGTTGGGGGACGTGGTTCTGCAGAGT
TCATTCGGCATGGTGAGTCGAAGGCTGAAATAGAAGGATTATTTCAAATTGAAGATGAAAAACACCCGGTCTTTGCCAAA
GCGGAAGAGTTTGGCCTGGATATGAATGATGGGATGGCGATACTTCGAAGGGATATCTCACAGAGCGGTAAAAGCGTTTG
CAGGGTAAATGGAAAGCTGGTAACGATTTCCACCTTGCGTGAGATAGGGAGAACATTGATAGACATCCATGGTCAGCATG
AACATCAGGAATTAATGGATGAACGACTCCATCTTCCGTTGCTCGATCAATTTGGCGGTGAAAAAATCGCATCTGCACTC
ACTGAATACCAAAAGCTATATAAACGTTATGAAACCGCTTCTAAACAATTGAACGGTTTGAGCCAAAATGAACAGCAAAT
GGTCCACCGCCTTGATTTGATCCAGTTTCAATTCGATGAAATCCAAAAAGCTGATTTGAAATTACGAGAAGATGAAGAAT
TGATGGAAGAACGGAAGAAAATTAATAATTTTGAAAAAATCCATGAAGCGCTGCAAACCAGTTATAATGCTTTGAATGGT
GAGCAGCATGCAATTGATTGGCTTTCCGTTGCCATGAATAATTTGGAGGAAGCGGCAGGGCTTGATGAAGGTTTAAAACA
CAGCTCTGAAACCGTTTCAAATAGCTACTTCCTTCTCGAAGAAGCTGTGTCAAACATCCGGGACCAATTGGACTCTTTGG
ATTATGATACAGAACGTGTGGAATTCATTGAAAGTCGACTTAATGAAATAAATCAATTAAAGCGTAAATACGGGCGAACC
ATCGAGGAAATCCTGGAATATGGGGCCGCAATTGAAGAAGAAGTCGAAAAACTGCAAAATAGGGAAACCCATATCGCGAA
GCTTGAAAAGGAAATGAAATCCATCAAGGCAGATCTTATTGTCGAAGCAAAGAATTTGTCTGAACTTCGCCAGAAATTCG
CTCAGCAGCTAACCAAAAAGATTCATCAGGAATTAAAGGATTTATATATGGAAAAAACAATTTTCGAACCTCATTTCCTT
CAGACAGCCTATACTTTCGATGAATTGTCAGATAGGGGCATTAATCAGTCAGGGCTGGATTCAATGGAATTTTATATTTC
CACCAATCCAGGTGAACCGTTAAAACCTCTTTCTAAAATCGCATCTGGTGGAGAACTGTCGAGGATCATGCTGGCTTTGA
AAAGCATTTTCTCCAAGCATCAAGGCATAACGTCCATTATATTTGATGAAGTGGATACAGGTGTGAGCGGACGGGTTGCG
CAATCCATTGCAGAAAAGATCTATAAAGTGGCAACTGGATCACAAGTATTATGCATATCCCATTTGCCACAGGTGGCAGC
CATGGCGGATACTCACCTTTTCATAGCGAAAAATGTAAGGGCCGGACGCACGAATACCTCGGTCAAGCCGCTAATTGAAA
CTGAAAAAATAAAAGAAATTGGCAGGATGATTTCGGGAGTAGAGATTACGGACTTGACGAAACAACATGCCAATGAATTA
ATCCAGCTGGCCAAAAGGCTGAAAATTACATCTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.764

100

0.613