Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   NW341_RS00100 Genome accession   NZ_CP102946
Coordinates   21629..22654 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain SCAID WND1-2022 (148)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 16629..27654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW341_RS00075 (NW341_00075) - 16817..17134 (-) 318 WP_003120685.1 tetratricopeptide repeat protein -
  NW341_RS00080 (NW341_00080) trkA 17283..18656 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  NW341_RS00085 (NW341_00085) rsmB 18684..19988 (-) 1305 WP_033876987.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  NW341_RS00090 (NW341_00090) fmt 19985..20929 (-) 945 WP_010793609.1 methionyl-tRNA formyltransferase -
  NW341_RS00095 (NW341_00095) def 20984..21490 (-) 507 WP_003107059.1 peptide deformylase -
  NW341_RS00100 (NW341_00100) tsaP 21629..22654 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  NW341_RS00105 (NW341_00105) dprA 22789..23877 (+) 1089 WP_003123764.1 DNA-processing protein DprA Machinery gene
  NW341_RS00110 (NW341_00110) - 23918..24475 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  NW341_RS00115 (NW341_00115) - 24485..25462 (-) 978 WP_003111202.1 NADPH:quinone reductase -
  NW341_RS00120 (NW341_00120) hemF 25653..26570 (+) 918 WP_019681058.1 oxygen-dependent coproporphyrinogen oxidase -
  NW341_RS00125 (NW341_00125) aroE 26628..27452 (+) 825 WP_003111201.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=618770 NW341_RS00100 WP_003097294.1 21629..22654(+) (tsaP) [Pseudomonas aeruginosa strain SCAID WND1-2022 (148)]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=618770 NW341_RS00100 WP_003097294.1 21629..22654(+) (tsaP) [Pseudomonas aeruginosa strain SCAID WND1-2022 (148)]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTATGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGCGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTATAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393