Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   HQJ03_RS06400 Genome accession   NZ_CP085510
Coordinates   1237502..1237825 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain HD1.4B     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1232502..1242825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQJ03_RS06375 (HQJ03_006375) - 1232778..1234064 (+) 1287 WP_048534151.1 D-alanyl-D-alanine carboxypeptidase family protein -
  HQJ03_RS06380 (HQJ03_006380) - 1234255..1234824 (+) 570 WP_000767792.1 signal peptidase I -
  HQJ03_RS06385 (HQJ03_006385) - 1234885..1235472 (+) 588 WP_000172852.1 CalY family protein -
  HQJ03_RS06390 (HQJ03_006390) - 1235607..1236449 (+) 843 WP_173602443.1 DUF4047 domain-containing protein -
  HQJ03_RS06395 (HQJ03_006395) calY 1236836..1237429 (+) 594 WP_071741057.1 biofilm matrix protein CalY -
  HQJ03_RS06400 (HQJ03_006400) sinR 1237502..1237825 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  HQJ03_RS06405 (HQJ03_006405) - 1237905..1238039 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  HQJ03_RS06410 (HQJ03_006410) inhA1 1238382..1240772 (+) 2391 WP_086407902.1 M6 family metalloprotease immune inhibitor InhA1 -
  HQJ03_RS06415 (HQJ03_006415) - 1240944..1242311 (+) 1368 WP_086407903.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=618720 HQJ03_RS06400 WP_000578885.1 1237502..1237825(-) (sinR) [Bacillus cereus strain HD1.4B]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=618720 HQJ03_RS06400 WP_000578885.1 1237502..1237825(-) (sinR) [Bacillus cereus strain HD1.4B]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692