Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   GDK18_RS04865 Genome accession   NZ_AP019543
Coordinates   993123..994109 (+) Length   328 a.a.
NCBI ID   WP_000959282.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KG-18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 988123..999109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDK18_RS04845 (SAKG18_09030) trpS 988714..989703 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  GDK18_RS04850 (SAKG18_09040) spxA 989997..990392 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  GDK18_RS04855 (SAKG18_09050) mecA 990763..991482 (+) 720 WP_001217728.1 adaptor protein MecA -
  GDK18_RS04860 (SAKG18_09060) - 991612..992931 (+) 1320 WP_001557163.1 ISL3-like element IS1181 family transposase -
  GDK18_RS15475 - 992934..993005 (+) 72 Protein_934 hypothetical protein -
  GDK18_RS04865 (SAKG18_09070) coiA 993123..994109 (+) 987 WP_000959282.1 competence protein CoiA family protein Machinery gene
  GDK18_RS04870 (SAKG18_09080) pepF 994157..995965 (+) 1809 WP_000082725.1 oligoendopeptidase F Regulator
  GDK18_RS04875 (SAKG18_09090) yjbH 996425..997231 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  GDK18_RS04880 (SAKG18_09100) - 997254..997619 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  GDK18_RS04885 (SAKG18_09110) - 997723..998316 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  GDK18_RS04890 (SAKG18_09120) - 998502..998849 (+) 348 WP_001242103.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38878.55 Da        Isoelectric Point: 9.5714

>NTDB_id=61865 GDK18_RS04865 WP_000959282.1 993123..994109(+) (coiA) [Staphylococcus aureus strain KG-18]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFHSLFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVYNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=61865 GDK18_RS04865 WP_000959282.1 993123..994109(+) (coiA) [Staphylococcus aureus strain KG-18]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCTGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCATAGTTTGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGTACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

100

100

1
  coiA Staphylococcus aureus MW2

97.561

100

0.976

Multiple sequence alignment