Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   HQN37_RS16615 Genome accession   NZ_CP085505
Coordinates   3383025..3384188 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus velezensis strain BT2.4     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3378025..3389188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN37_RS16585 (HQN37_016585) - 3378290..3378709 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  HQN37_RS16590 (HQN37_016590) comFC 3378783..3379472 (-) 690 WP_197197403.1 phosphoribosyltransferase family protein Machinery gene
  HQN37_RS16595 (HQN37_016595) - 3379478..3379762 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  HQN37_RS16600 (HQN37_016600) comFA 3379820..3381205 (-) 1386 WP_012118573.1 DEAD/DEAH box helicase Machinery gene
  HQN37_RS16605 (HQN37_016605) - 3381313..3382161 (-) 849 WP_003151387.1 DegV family protein -
  HQN37_RS16610 (HQN37_016610) degU 3382259..3382948 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HQN37_RS16615 (HQN37_016615) degS 3383025..3384188 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  HQN37_RS16620 (HQN37_016620) - 3384411..3385058 (+) 648 WP_007614107.1 YigZ family protein -
  HQN37_RS16625 (HQN37_016625) - 3385063..3386283 (+) 1221 WP_012118574.1 LCP family protein -
  HQN37_RS16630 (HQN37_016630) - 3386382..3387458 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  HQN37_RS16635 (HQN37_016635) tuaH 3387591..3388787 (-) 1197 WP_012118575.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=618644 HQN37_RS16615 WP_007407484.1 3383025..3384188(-) (degS) [Bacillus velezensis strain BT2.4]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=618644 HQN37_RS16615 WP_007407484.1 3383025..3384188(-) (degS) [Bacillus velezensis strain BT2.4]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTTAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGGGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951