Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NW342_RS19170 Genome accession   NZ_CP102944
Coordinates   4116559..4117155 (-) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain SCAID TCT1-2022 (325)     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4111559..4122155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW342_RS19145 (NW342_19145) - 4111905..4112102 (-) 198 Protein_3790 TetR family transcriptional regulator -
  NW342_RS19150 (NW342_19150) - 4112195..4113778 (+) 1584 WP_003121915.1 NAD(P)/FAD-dependent oxidoreductase -
  NW342_RS19155 (NW342_19155) - 4113775..4114662 (+) 888 WP_003087246.1 SDR family oxidoreductase -
  NW342_RS19160 (NW342_19160) - 4114736..4115275 (+) 540 WP_003087245.1 CbrC family protein -
  NW342_RS19165 (NW342_19165) - 4115288..4116436 (-) 1149 WP_003087244.1 acyl-CoA dehydrogenase family protein -
  NW342_RS19170 (NW342_19170) recR 4116559..4117155 (-) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  NW342_RS19175 (NW342_19175) - 4117234..4117560 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  NW342_RS19180 (NW342_19180) dnaX 4117606..4119717 (-) 2112 WP_023097797.1 DNA polymerase III subunit gamma/tau -
  NW342_RS19185 (NW342_19185) - 4119754..4120620 (+) 867 WP_074241328.1 ABC transporter substrate-binding protein -
  NW342_RS19195 (NW342_19195) - 4120874..4121251 (-) 378 WP_003083354.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=618633 NW342_RS19170 WP_003087237.1 4116559..4117155(-) (recR) [Pseudomonas aeruginosa strain SCAID TCT1-2022 (325)]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=618633 NW342_RS19170 WP_003087237.1 4116559..4117155(-) (recR) [Pseudomonas aeruginosa strain SCAID TCT1-2022 (325)]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTGGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGTGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48