Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   NW342_RS00145 Genome accession   NZ_CP102944
Coordinates   34590..35615 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain SCAID TCT1-2022 (325)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 29590..40615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW342_RS00120 (NW342_00120) - 29779..30096 (-) 318 WP_003097288.1 tetratricopeptide repeat protein -
  NW342_RS00125 (NW342_00125) trkA 30245..31618 (-) 1374 WP_003111375.1 Trk system potassium transporter TrkA -
  NW342_RS00130 (NW342_00130) rsmB 31645..32949 (-) 1305 WP_023095007.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  NW342_RS00135 (NW342_00135) fmt 32946..33890 (-) 945 WP_023095008.1 methionyl-tRNA formyltransferase -
  NW342_RS00140 (NW342_00140) def 33945..34451 (-) 507 WP_003107059.1 peptide deformylase -
  NW342_RS00145 (NW342_00145) tsaP 34590..35615 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  NW342_RS00150 (NW342_00150) dprA 35750..36838 (+) 1089 WP_015502109.1 DNA-processing protein DprA Machinery gene
  NW342_RS00155 (NW342_00155) - 36879..37436 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  NW342_RS00160 (NW342_00160) - 37446..38423 (-) 978 WP_033991581.1 quinone oxidoreductase -
  NW342_RS00165 (NW342_00165) hemF 38614..39531 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  NW342_RS00170 (NW342_00170) aroE 39589..40413 (+) 825 WP_127563119.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=618587 NW342_RS00145 WP_003097294.1 34590..35615(+) (tsaP) [Pseudomonas aeruginosa strain SCAID TCT1-2022 (325)]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=618587 NW342_RS00145 WP_003097294.1 34590..35615(+) (tsaP) [Pseudomonas aeruginosa strain SCAID TCT1-2022 (325)]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAATGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393