Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   NW313_RS13475 Genome accession   NZ_CP102927
Coordinates   2964487..2966322 (-) Length   611 a.a.
NCBI ID   WP_001918120.1    Uniprot ID   -
Organism   Vibrio cholerae strain N1252     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2959487..2971322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW313_RS13455 fhuA 2959563..2961662 (-) 2100 WP_001244551.1 TonB-dependent siderophore receptor FhuA -
  NW313_RS13460 - 2961797..2963626 (+) 1830 WP_000488008.1 ABC transporter ATP-binding protein -
  NW313_RS13465 - 2963662..2964024 (-) 363 WP_001235441.1 hypothetical protein -
  NW313_RS13470 - 2964195..2964494 (-) 300 WP_000807263.1 DUF3630 family protein -
  NW313_RS13475 recQ 2964487..2966322 (-) 1836 WP_001918120.1 ATP-dependent DNA helicase RecQ Machinery gene
  NW313_RS13480 rarD 2966549..2967391 (+) 843 WP_001889839.1 EamA family transporter RarD -
  NW313_RS13485 ggt 2967565..2969319 (+) 1755 WP_001104638.1 gamma-glutamyltransferase -
  NW313_RS13490 - 2969476..2970279 (+) 804 WP_000381934.1 AraC family transcriptional regulator -
  NW313_RS13495 - 2970354..2971022 (+) 669 WP_001004599.1 LysE family translocator -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69128.42 Da        Isoelectric Point: 7.1164

>NTDB_id=618581 NW313_RS13475 WP_001918120.1 2964487..2966322(-) (recQ) [Vibrio cholerae strain N1252]
MTATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISL
MKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPC
GNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYV
VFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=618581 NW313_RS13475 WP_001918120.1 2964487..2966322(-) (recQ) [Vibrio cholerae strain N1252]
ATGACCGCGACTTTAATGGCTGAATCTTCTGCTCTCTTTGCCACTCCTGAACGTGTTTTGCACGAGGTGTTTGGCTATCA
GCAATTTCGCGTCGGTCAGCAAGAGGTGATTGAGGCGGCGCTGGCTGGGCGTGATAGCTTGGTCATTATGCCGACTGGCG
GTGGTAAATCGCTCTGTTACCAGATCCCTGCACTGGTGCTGGAAGGGGTCACGTTAGTGATTTCTCCCCTGATTTCGCTG
ATGAAAGATCAGGTTGACCAGCTTAAAGCCAACGGTGTCGCCGCCGAGTGTGTCAATTCCACCTTGGCGCGCGAGGAACT
GATCGCGATTTATAACCGCATGCATGCTGGCCAGCTCAAGCTGCTGTATGTGTCGCCAGAGCGGGTATTGACCGCCGAGT
TTATCGAACGGCTCAGCCATCTGCCGTTAGCCATGATTGCGGTTGATGAAGCGCACTGTATTTCGCAATGGGGACACGAT
TTTCGTCCTGAATACGCCTCATTAGGCCAGCTTAAGCAGCGTTTCCCGAATGTGCCAGTGATGGCGCTGACGGCGACTGC
GGATGACGCGACCCGTCACGATATCATGCAGCGTTTGCAGCTCAATGAGCCGCATCAGTATCTGGGCAGCTTTGATCGCC
CGAACATTCGCTACATGCTGGTGGAAAAACATAAGCCGGTTTCACAAGTGATTCGTTATCTGGAAACTCAGCGCGGGCAG
TGCGGCATCATCTATTGTGGCAGCCGTAAAAAAGTGGAAATGCTCACTGAAAAGCTGTGCGGCAACCACATTCGCGCCGC
CAGTTACCATGCAGGGATGGATGCCGATGAGCGCGCTTGGGTGCAAGAAGCGTTTCAGCGTGATGACCTGCAAATTGTGG
TGGCGACCGTGGCGTTTGGCATGGGGATTAATAAACCCAACGTGCGCTTTGTGGTGCATTTTGATATTCCACGCAACATT
GAATCCTACTATCAGGAAACTGGTCGCGCAGGGCGTGATGGTTTGCCTGCTGAAGCCATGATGCTGTACGACCCTGCCGA
CATGAACTGGCTGCGCCGTATGCTCGATGAAAAGCCCGATGGCGCGCAAAAACAGGTTGAAAGCCACAAGCTCACCGCCA
TGGGCGCGTTTGCTGAAGCGCAAACTTGTCGCCGCCAAGTATTGCTCAATTATTTTGGCGAATATCGCGATAAGCCATGT
GGTAACTGCGATATCTGCCTCGACCCGCCCAAGCGTTTTGATGCCACGGAAGAGGCGCGCAAAGCCTTGTCGTGTGTCTA
TCGCGTCAATCAAAACTTCGGGATTGGCTATGTGGTGGAAGTGTTGCGCGGCATGCAAAACATCCGCATTCGCGAACATG
GTCACGACAAAATTACCACTTATGGGATTGGCCGCGATCACAGCCACGATTACTGGGTGAGTATTTTCCGCCAACTGATC
CACAAAGGCATGCTCTACCAAAACATCACGCGCAACTCGACATTGCAACTGACCGAAGAAGCTCGCCCTTTGCTGCGCGG
TGAAATGAATATTGAGCTGGCGGTACCGCGTTTAGATACCGCGGCGCGCGCGGCGAAATCCGACAAATTGTCGGGCAAAA
ACTACGACAAAAAACTGTTTGCCAAACTGCGTAAGCTGCGTAAATCGATCGCCGATGACGAAGGGTTACCACCGTATGTG
GTGTTCAGTGACGCCACCTTGATTGATATGGCGGAGATCATGCCAACCTCTTATGGCGAAATGTTGGCGGTGAATGGGGT
TGGGCAGCGCAAGCTGGAAAAATACGCCGACCCGTTTTTGGATCTGATTCAGGAGCATTTGACCTATCATGGCTGA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)

Helicase conserved C-terminal domain (Helicase_C)

(229-333)

HRDC domain (HRDC)

(537-603)

RQC domain (RQC)

(409-517)

DEAD/DEAH box helicase (DEAD)

(33-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.641

97.054

0.394