Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   HQN47_RS12820 Genome accession   NZ_CP085504
Coordinates   2625543..2626295 (-) Length   250 a.a.
NCBI ID   WP_012118107.1    Uniprot ID   A7Z796
Organism   Bacillus velezensis strain BP1.2A     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2620543..2631295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN47_RS12795 (HQN47_012795) mreC 2620979..2621842 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  HQN47_RS12800 (HQN47_012800) mreB 2621873..2622886 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  HQN47_RS12805 (HQN47_012805) radC 2622978..2623673 (-) 696 WP_007408165.1 DNA repair protein RadC -
  HQN47_RS12810 (HQN47_012810) - 2623705..2624274 (-) 570 WP_012118105.1 nucleoside triphosphate pyrophosphatase -
  HQN47_RS12815 (HQN47_012815) - 2624415..2625416 (-) 1002 WP_012118106.1 SPOR domain-containing protein -
  HQN47_RS12820 (HQN47_012820) comC 2625543..2626295 (-) 753 WP_012118107.1 A24 family peptidase Machinery gene
  HQN47_RS12825 (HQN47_012825) - 2626435..2627727 (-) 1293 WP_012118108.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  HQN47_RS12830 (HQN47_012830) - 2627786..2630428 (-) 2643 WP_012118109.1 valine--tRNA ligase -
  HQN47_RS12835 (HQN47_012835) - 2630881..2631072 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27219.94 Da        Isoelectric Point: 9.4293

>NTDB_id=618557 HQN47_RS12820 WP_012118107.1 2625543..2626295(-) (comC) [Bacillus velezensis strain BP1.2A]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=618557 HQN47_RS12820 WP_012118107.1 2625543..2626295(-) (comC) [Bacillus velezensis strain BP1.2A]
GTGCTTTTGATTCTGTTTTTTCTAGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GGCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTAAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGAGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z796

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584